| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4504474 = | 73 (1.320) | 5 (0.090) | 5/248 | NT | 6.7% | coding (232/360 nt) | PP_3994 | TusC‑like tRNA 2‑thiouridine(34) synthase |
| ? | NC_002947 | 4504519 = | 68 (1.270) | coding (277/360 nt) | PP_3994 | TusC‑like tRNA 2‑thiouridine(34) synthase | |||||
GCAATTACATGCAGGGTCTTCATCAGAGCGTTATCACCTGGTCGAAACGGGCTATCAGGGCGGTCAGCGCTGCGTCATCGAGCACTTGCACCGGCAGCGCCAGGGTTTCGGCTGCCAGGCCACGGCGGGCCAGGCTGTGGTTGCAGGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4504624‑4504474‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaaACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCAGGTGATAACGCTCTGATGAAGACCCTGCATGTAATTGCCCATTCCCCGTTTGGCGACGAGCGCCTGGCCAGTTGCCTGCG > NC_002947/4504519‑4504666 GCAATTACATGCAGGGTCTTCATCAGAGCGTTATCACCTGGTCGAAACGGGCTATCAGGGCGGTCAGCGCTGCGTCATCGAGCACTTGCACCGGCAGCGCCAGGGTTTCGGCTGCCAGGCCACGGCGGGCCAGGCTGTGGTTGCAGGC > 1:288379/1‑148GCAATTACATGCAGGGTCTTCATCAGAGCGTTATCACCTGGTCGAAACGGGCTATCAGGGCGGTCAGCGCTGCGTCATCGAGCACTTGCACCGGCAGCGCCAGGGTTTCGGCTGCCAGGCCACGGCGGGCCAGGCTGTGGTTGCAGGC > 5:199148/1‑148 AGAGCGTTATCACCTGGTCGAAACGGGCTATCAGGGCGGTCAGCGCTGCGTCATCGAGCACTTGCACCGGCAGCGCCAGGGTTTCGGCTGCCAGGCCACGGCGGGCCAGGCTGTGGTTGCAGGC > 3:329116/1‑124 AGAGCGTTATCACCTGGTCGAAACGGGCTATCAGGGCGGTCAGCGCTGCGTCATCGAGCACTTGCACCGGCAGCGCCAGGGTTTCGGCTGCCAGGCCACGGCGGGCCAGGCTGTGGTTGCAGGC < 4:329116/124‑1 GCCAGGGTTTCGGCTGCCAGGCCACGGCGGGCCAGGCTGTGGTTACAGGCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCAGGTGATAACGCTCTGATGAAGACCCTG > 7:109291/1‑148 CCAGGGTTTCGGCTGCCAGGCCACGGCGGGCCAGGCTGTGGTTGCAGGCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCAGGTGATAACGCTCTGATGAAGACCCTGCA > 7:290319/1‑149 GGCTGCCAGGCCACGGCGGGCCAGGCTGTGGTTGCAGGCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCAGGTGATA < 1:95617/117‑1 GGCTGCCAGGCCACGGCGGGCCAGGCTGTGGTTGCAGGCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCAGGTGATA > 2:95617/1‑117 TGGTTACAGGCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCAGGTGATAACGCTCTGATGAAGACCCTGCATGTAATTGCCCATTCCCCGTTTGGCGACGAGCGCCTGG < 8:109291/149‑1 CGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCAGGTGATAACGCTCTGATGAAGACCCTGCATGTAATTGCCCATTCCCCGTTTGGCGACGAGCGCCTGGCCAGTTGCCT < 8:290319/149‑1 AACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCAGGTGATAACGCTCTGATGAAGACCCTGCATGTAATTGCCCATTCCCCGTTTGGCGACGAGCGCCTGGCCAGTTGCCTGCG < 3:12335/149‑1 AACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCAGGTGATAACGCTCTGATGAAGACCCTGCATGTAATTGCCCATTCCCCGTTTGGCGACGAGCGCCTCGCCAGTTGCCTGCG < 7:305175/149‑1 GCAATTACATGCAGGGTCTTCATCAGAGCGTTATCACCTGGTCGAAACGGGCTATCAGGGCGGTCAGCGCTGCGTCATCGAGCACTTGCACCGGCAGCGCCAGGGTTTCGGCTGCCAGGCCACGGCGGGCCAGGCTGTGGTTGCAGGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4504624‑4504474‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaaACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCAGGTGATAACGCTCTGATGAAGACCCTGCATGTAATTGCCCATTCCCCGTTTGGCGACGAGCGCCTGGCCAGTTGCCTGCG > NC_002947/4504519‑4504666 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |