New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4956132	56 (1.010)	3 (0.060)	3/242	NT	5.6%	coding (623/1374 nt)	fliI	flagellum‑specific ATP synthase
	?	NC_002947	= 4956158	49 (0.940)					coding (597/1374 nt)	fliI	flagellum‑specific ATP synthase

GAAGTACTCGGCAATGCGTGTGCAATACATGGCGGCGCGCAGGCGCATCAGCGGCGCATCGTCGGCCGGCGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4955978‑4956132 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaccgaAGCCGAAATCATCGTGGTCGGCCTGATCGGTGAGCGGGGGCGCGAGGTGAAGGAATTCATCGAGCACATCCTTGGTGAAGAGGGCCTCAAGCGCTCGGTGGTGGTGGCTTCGCCGGCCGACGATGCGCCGCTGATGCGCCTGC  <  NC_002947/4956158‑4956016                                                                                                                                                                                                                                                                                                            GAAGTACTCGGCAATGCGTGTGCAATACATGGCGGCGCGCAGGCGCATCAGCGGCGCATCGTCGGCCGGCGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCT                                                                                                                                                       >  3:334309/1‑149                                              CATCAGCGGCGCATCGTCGGCCGGCGCAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGACTTCCTTCACCTCGCGCCCCCGCTCACCGAAGCCGAAATCATCGGGGTCGGCCTGATCGGTGAGCGGGG                                                                                                          <  6:201754/149‑1                                                                                                     TCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGAAGCCGAAATCATCGTGGTCGGCCTGAT                                                                                                                      >  7:235049/1‑82                                                                                                     TCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGAAGCCGAAATCATCGTGGTCGGCCTGAT                                                                                                                      <  8:235049/82‑1                                                                                                                                                      CACCGAAGCCGAAATCATCGTGGTCGGCCTGATCGGTGAGCGGGGGCGCGAGGTGAAGGAATTCATCGAGCACATCCTTGGTGAAGAGGGCCTCAAGCGCTCGGTGGTGGTGGCTTCGCCGGCCGACGATGCGCCGCTGATGCGCCTGC  >  7:275652/1‑149                                                                                                                                                                                                                                                                                                            GAAGTACTCGGCAATGCGTGTGCAATACATGGCGGCGCGCAGGCGCATCAGCGGCGCATCGTCGGCCGGCGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4955978‑4956132 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaccgaAGCCGAAATCATCGTGGTCGGCCTGATCGGTGAGCGGGGGCGCGAGGTGAAGGAATTCATCGAGCACATCCTTGGTGAAGAGGGCCTCAAGCGCTCGGTGGTGGTGGCTTCGCCGGCCGACGATGCGCCGCTGATGCGCCTGC  <  NC_002947/4956158‑4956016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.