New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4956132	56 (1.010)	3 (0.060)	3/242	NT	5.6%	coding (623/1374 nt)	fliI	flagellum‑specific ATP synthase
	?	NC_002947	= 4956158	49 (0.940)					coding (597/1374 nt)	fliI	flagellum‑specific ATP synthase

GGCAATGCGTGTGCAATACATGGCGGCGCGCAGGCGCATCAGCGGCGCATCGTCGGCCGGCGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTACCGGCGAACAGGCCTAACCGCTGGCCACGGCCGACGGTAAGCAGGCCGTTGATACTGCGAATGCCCACATC  >  NC_002947/4955987‑4956280                                                                                                                                                  |                                                                                                                                                     ggCAATGCGTGTGCAATACATGGCGGCGCGCAGGCGCATCAGCGGCGCATCGTCGGCCGGCGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGAt                                                                                                                                                     >  3:157260/1‑147 (MQ=255)  gCAATGCGTGTGCAATACATGGCGGCGCGCAGGCGCATCAGCGGCGCATCGTCGGCCGGCGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAg                                                                                                                                                  >  7:328938/1‑149 (MQ=255)   cAATGCGTGTGCAATACATGGCGGCGCGCAGGCGCATCAGCGGCGCATCGTCGGCCGGCGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAgg                                                                                                                                                 <  3:132908/149‑1 (MQ=255)          tgtgCAATACATGGCGGCGCGCAGGCGCATCAGCGGCGCATCGTCGGCCGGCGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCa                                                                                                                                          >  8:45720/1‑149 (MQ=255)          tgtgCAATACATGGCGGCGCGCAGGCGCATCAGCGGCGCATCGTCGGCCGGCGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCa                                                                                                                                          >  5:131688/1‑149 (MQ=255)           gtgCAATACATGGCGGCGCGCAGGCGCATCAGCGGCGCATCGTCGGCCGGCGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCAc                                                                                                                                         >  7:202048/1‑149 (MQ=255)             gCAATACATGGCGGCGCGCAGGCGCATCAGCGGCGCATCGTCGGCCGGCGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACga                                                                                                                                       <  6:206192/149‑1 (MQ=255)              cAATACATGTCGGCGCGCAGGCTCATCAGCGGCGCATCGTCTGCCGGCGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCTCCTCGCGCCCCCGCTCACCGATCAGGCCGACCACga                                                                                                                                       <  2:117146/148‑1 (MQ=255)              cAATACATGGCGGCGCGCAGGCGCATCAGCGGCGCATCGTCGGCCGGCGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACga                                                                                                                                       <  3:158037/148‑1 (MQ=255)               aaTACATGGCGGCGCGCAGGCGCATCAGCGGCGCATCGTCGGCCGGCGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACgat                                                                                                                                      >  3:317110/1‑148 (MQ=255)                 tACATGGCGGCGCGCAGGCGCATCAGCGGCGCATCGTCGGCCGGCGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGAcc                                                                                                                                           <  8:188522/141‑1 (MQ=255)                 tACATGGCGGCGCGCAGGCGCATCAGCGGCGCATCGTCGGCCGGCGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGAcc                                                                                                                                           >  7:188522/1‑141 (MQ=255)                    aTGGCGGCGCGCAGGCGCATCAGCGGCGCATCGTCGGCCGGCGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGa                                                                                                                                             >  8:217365/1‑136 (MQ=255)                    aTGGCGGCGCGCAGGCGCATCAGCGGCGCATCGTCGGCCGGCGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGa                                                                                                                                             <  7:217365/136‑1 (MQ=255)                    aTGGCGGCGCGCAGGCGCATCAGCGGCGCATCGTCGGCCGGCGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTc                                                                                                                                <  4:317110/149‑1 (MQ=255)                     tGGCGGCGCGCAGGCGCATCAGCGGCGCATCGTCGGCCGGCGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCg                                                                                                                               >  7:202864/1‑149 (MQ=255)                              gcAGGCGCATCAGCGGCGCATCGTCGGCCGGCGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTtcggtg                                                                                                                      >  7:275652‑M2/1‑143 (MQ=255)                                 ggCGCATCAGCGGCGCATCGTCGGCCGGCGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGaaa                                                                                                                   <  8:202048/149‑1 (MQ=255)                                     cATCAGCGGCGCATCGTCGGCCGGCGCAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGACTTCCTTCACCTCGCGCCCCCGCTCACCGAagccgaaatcatcggggtcggcctgatcggtgagcgggg                                                                                                               <  6:201754‑M1/149‑40 (MQ=255)                                     cATCAGCGGCGCATCGTCGGCCGGCGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACggg                                                                                                               >  6:13197/1‑149 (MQ=255)                                          gcggcgCATCGTCGGCCGGCGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGtcatc                                                                                                          <  4:334309/149‑1 (MQ=255)                                                 aTCGTCGGCCGGCGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCa                                                                                                   <  8:253595/149‑1 (MQ=255)                                                 aTCGTCGGCCGGCGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCa                                                                                                   <  8:202864/149‑1 (MQ=255)                                                       ggccggcGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATa                                                                                             >  7:283401/1‑149 (MQ=255)                                                        gccggcGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATAc                                                                                            <  8:328938/149‑1 (MQ=255)                                                           ggcGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGa                                                                                         >  5:321057/1‑149 (MQ=255)                                                                   caccaccacCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCca                                                                                 >  7:123132/1‑149 (MQ=255)                                                                    accaccaccGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGaaa                                                                                                                   <  7:313580/114‑1 (MQ=255)                                                                    accaccaccGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGaaa                                                                                                                   >  8:313580/1‑114 (MQ=255)                                                                      caccaccGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCacac                                                                              <  2:325346/149‑1 (MQ=255)                                                                      caccaccGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCacac                                                                              <  8:123132/149‑1 (MQ=255)                                                                            cGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTAc                                                                        <  8:283401/149‑1 (MQ=255)                                                                            cGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTAc                                                                        <  5:13197/149‑1 (MQ=255)                                                                            cGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTAACCCACACCGGTAc                                                                        >  4:55494/1‑149 (MQ=255)                                                                              aGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTACCg                                                                      >  8:46700/1‑149 (MQ=255)                                                                                cgcTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTACCGGc                                                                    >  6:269305/1‑149 (MQ=255)                                                                                cgcTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTACCGGc                                                                    <  5:269305/149‑1 (MQ=255)                                                                                   ttGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTACCGGCGaa                                                                 >  5:280428/1‑149 (MQ=255)                                                                                       ggCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTCCCGGCGAACAgg                                                             >  8:332756/1‑149 (MQ=255)                                                                                         gccgtcccACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTACCGGCGAACAGGcc                                                           <  4:338487/142‑1 (MQ=255)                                                                                          ccTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTACCGGCGAACAGGcc                                                           >  7:259986/1‑148 (MQ=255)                                                                                           ctctTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTACCGGCGAACAGGCCt                                                          >  3:96102/1‑148 (MQ=255)                                                                                            tctTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGAagccgaaatcatcgtggtcggcctgat                                                                                                                           <  8:235049‑M1/82‑28 (MQ=255)                                                                                            tctTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGAagccgaaatcatcgtggtcggcctgat                                                                                                                           >  7:235049‑M1/1‑55 (MQ=255)                                                                                                 aCCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTACCGGCGAACAGGCCTAACCGCt                                                   <  6:131688/149‑1 (MQ=255)                                                                                                  ccAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTACCGGCGAACAGGCCTAACCGCTg                                                  <  7:45720/149‑1 (MQ=255)                                                                                                  ccAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTACCGGCGAACAGGCCTAACCGCTg                                                  >  1:276387/1‑149 (MQ=255)                                                                                                   cAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTACCGGCGAACAGGCCTAACCGCTgg                                                 >  4:110599/1‑149 (MQ=255)                                                                                                   cAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTACCGGCGAACAGGCCTAACCGCTgg                                                 >  5:107413/1‑149 (MQ=255)                                                                                                    aaGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTAcc                                                                       >  8:6502/1‑126 (MQ=255)                                                                                                    aaGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTAcc                                                                       <  7:6502/126‑1 (MQ=255)                                                                                                      ggATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTACCGGCGAACAGGCCTAACCGCTGGCCa                                              >  6:225265/1‑149 (MQ=255)                                                                                                      ggATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTACCGGCGAACAGGCCTAACCGCTGGCCa                                              <  6:321057/149‑1 (MQ=255)                                                                                                                gATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTGGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTACCGGCGAACAGGCCTAACCGCTGGCCACGGCCGACgg                                    <  2:161909/149‑1 (MQ=255)                                                                                                                gATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTACCGGCGAACAGGCCTAACCGCTGGCCACGGCCGACgg                                    >  1:143531/1‑149 (MQ=255)                                                                                                                        ccTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTACCGGCGAACAGGCCTAACCGCTGGCCACGGCCGACGGTAAGCAg                             <  5:225265/148‑1 (MQ=255)                                                                                                                         cTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTACCGGCGAACAGGCCTAACCGCTgg                                                 >  1:345442/1‑127 (MQ=255)                                                                                                                         cTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTACCGGCGAACAGGCCTAACCGCTgg                                                 <  2:345442/127‑1 (MQ=255)                                                                                                                          ttCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTACCGGCGAACAGGCCTAACCGCTGGCCACGGCCGACGGTAAGCAGGcc                          >  4:319465/1‑149 (MQ=255)                                                                                                                             aCCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTACCGGCGAACAGGCCTAACCGCTGGCCACGGCCGACGGTAAGCAGGCCGt                        <  4:157260/148‑1 (MQ=255)                                                                                                                                      ccccGCTCACCGATCAGGCCGACCCCGATGATTTCGGCTtcggtgagcgggggcgcgaggtgaaggaagtcatcgagcacatccttggtgaagagggcctcaagcgctcggtggtggtggctgcgccggccgacgatgcgccgctgatg              <  6:201754‑M2/149‑111 (MQ=255)                                                                                                                                      ccccGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTACCGGCGAACAGGCCTAACCGCTGGCCACGGCCGACGGTAAGCAGGCCGTTGATACTGc               >  3:287500/1‑148 (MQ=255)                                                                                                                                            tCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTACCGGCGAACAGGCCTAACCGCTGGCCACGGCCGACGGTAAGCAGGCCGTTGATACTGCGAATGcc        >  6:307445/1‑149 (MQ=255)                                                                                                                                             cACCGAagccgaaatcatcgtggtcggcctgatcggtgagcgggggcgcgaggtgaaggaattcatcgagcacatccttggtgaagagggcctcaagcgctcggtggtggtggcttcgccggccgacgatgcgccgctgatgcgcctgc       >  7:275652‑M1/1‑6 (MQ=255)                                                                                                                                             cACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTACCGGCGAACAGGCCTAACCGCTGGCCACGGCCGACGGTAAGCAGGCCGTTGATACTGCGAATGccc       <  7:192005/149‑1 (MQ=255)                                                                                                                                              aCCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTACCGGCGAACAGGCCTAACCGCTGGCCACGGCCGACGGTAAGCAGGCGGTTGATACTGCGAATGCCca      <  6:280428/149‑1 (MQ=255)                                                                                                                                              aCCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTACCGGCGAACAGGCCTAACCGCTGGCCACGGCCGACGGTAAGCAGGCCGTTGATACTGCGAATGcc        <  3:319465/147‑1 (MQ=255)                                                                                                                                                  aTCAGGCCGACCACGATGATTTCGGCTtcggtgagcgggggcgcgaggtgaaggaattcatcgagcacatccttggtgaaga                                                                     <  8:235049‑M2/82‑56 (MQ=255)                                                                                                                                                  aTCAGGCCGACCACGATGATTTCGGCTtcggtgagcgggggcgcgaggtgaaggaattcatcgagcacatccttggtgaaga                                                                     >  7:235049‑M2/1‑27 (MQ=255)                                                                                                                                                  aTCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTACCGGCGAACAGGCCTAACCGCTGGCCACGTCCGACGGTAAGCAGGCCGTTGATACTGCGAATGCCCACATc  >  6:106605/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                     GGCAATGCGTGTGCAATACATGGCGGCGCGCAGGCGCATCAGCGGCGCATCGTCGGCCGGCGAAGCCACCACCACCGAGCGCTTGAGGCCCTCTTCACCAAGGATGTGCTCGATGAATTCCTTCACCTCGCGCCCCCGCTCACCGATCAGGCCGACCACGATGATTTCGGCTTCGGTGAAACGGGTCATCATGCCCAGCAATACCGATTTACCCACACCGGTACCGGCGAACAGGCCTAACCGCTGGCCACGGCCGACGGTAAGCAGGCCGTTGATACTGCGAATGCCCACATC  >  NC_002947/4955987‑4956280

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.