New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5080220 =	53 (0.960)	3 (0.060)	3/240	NT	6.4%	intergenic (‑85/+83)	csrA/lysC	carbon storage regulator/aspartokinase
	?	NC_002947	5080257 =	38 (0.730)					intergenic (‑122/+46)	csrA/lysC	carbon storage regulator/aspartokinase

GTACCTGGAGCTGGCCGTACGCGCGCTGCATACCGCGTTCGATCTGGATGCTCCTGCCCGACAGGGCGAGTAAGGCGCTGCCTGGAAGGGCGCGGCTTGCCGCGCCCTTCGCGTTTCTGCTCGCCGCGCAGGTCCTGTCCTGCCTTGTGCGGCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5080375‑5080220 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcgagCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTCGAGCACCACCGAAACCTT  >  NC_002947/5080257‑5080401                                                                                                                                                                                                                                                                                                               gtcCCTGGAGCGGCCCGTACGCGCGCTGAATACCGCTTTCGTGCTGGATGCTCCTGCCCGACAGGGCGAGTAAGGCGCTGCCTGGAAGGGCGCGGCTTGCCGCGCCCTTCGCGTTTCTGCTCGCCGCGCAGGTCCTGTCCTGCCTTGTG                                                                                                                                                          <  8:326573/146‑1     CTGGAGCTGGCCGTACGCGCGCTGCATACCGCGTTCGATCTGGATGCTCCTGCCCGACAGGGCGAGTAAGGCGCTGCCTGGAAGGGCGCGGCTTGCCGCGCCCTTCGCGTTTCTGCTCGCCGCGCAGGTCCTGTCCTGCCTTGTGCGGC                                                                                                                                                      <  5:348824/149‑1        GAGCTGGCCGTACGCGCGCTGCATACCGCGTTCGATCTGGATGCTCCTGCCCGACAGGGCGAGTAAGGCGCTGCCTGGAAGGGCGCGGCTTGCCGCGCCCTTCGCGTTTCTGCTCGCCGCGCAGGTCCTGTCCTGCCTTGTGCGGCGAG                                                                                                                                                   <  2:170554/149‑1                                                                                                                       GCTCGCCGCGCAGGTCCTGTCCTGCCTTGTGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCT                                    >  2:283819/1‑149                                                                                                                           GCCGCGCAGGTCCTGTCCTGCCTTGTGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCATCCAGGCAGCGCCTCACTCGCCCTGTCGGGCAGGAGCATCCAGATCG                                                                   <  7:265624/114‑1                                                                                                                           GCCGCGCAGGTCCTGTCCTGCCTTGTGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCATCCAGGCAGCGCCTCACTCGCCCTGTCGGGCAGGAGCATCCAGATCG                                                                   >  8:265624/1‑114                                                                                                                                                     GCGGCGAGCAGAAACGCTAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGACTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTCGAGCACCACCGAAA      <  7:326629/149‑1                                                                                                                                                        GCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGATCGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTCGAGCACCACCGAAACCT   <  6:98529/149‑1                                                                                                                                                         CGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTCGAGCACCACCGAAACCTT  <  1:170554/149‑1                                                                                                                                                                                                                                                                                                               GTACCTGGAGCTGGCCGTACGCGCGCTGCATACCGCGTTCGATCTGGATGCTCCTGCCCGACAGGGCGAGTAAGGCGCTGCCTGGAAGGGCGCGGCTTGCCGCGCCCTTCGCGTTTCTGCTCGCCGCGCAGGTCCTGTCCTGCCTTGTGCGGCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5080375‑5080220 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcgagCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTCGAGCACCACCGAAACCTT  >  NC_002947/5080257‑5080401

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.