New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5080220 =	53 (0.960)	3 (0.060)	3/240	NT	6.4%	intergenic (‑85/+83)	csrA/lysC	carbon storage regulator/aspartokinase
	?	NC_002947	5080257 =	38 (0.730)					intergenic (‑122/+46)	csrA/lysC	carbon storage regulator/aspartokinase

GGCGCACCGACGAGTCAGAATCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTCGAGCACCACCGAAACCTT  >  NC_002947/5080109‑5080401                                                                                                                                                     |                                                                                                                                                 agctggccgtacgcgcgctgcataccgcgttcgatctggatgctcctgcccgacagggcgagtaaggcgctgcctggaagggcgcggcttgccgcgcccttcgcgtttctgCTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGc                                                                                                                                                  >  2:283819‑M1/112‑149 (MQ=255)          acgaGTCAGAATCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAAagc                                                                                                                                          >  7:236132/1‑148 (MQ=255)                  gAATCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAgg                                                                                                                                     <  2:348981/145‑1 (MQ=255)                  gAATCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAgg                                                                                                                                     >  1:348981/1‑145 (MQ=255)                  gAATCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGgcgc                                                                                                                                 >  2:318667/1‑149 (MQ=255)                   aaTCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGcgcg                                                                                                                                >  2:207549/1‑149 (MQ=255)                     tCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGc                                                                                                                              <  1:318667/149‑1 (MQ=255)                      cAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGc                                                                                                                              >  7:245504/1‑148 (MQ=255)                       aaCATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCaa                                                                                                                            <  4:337677/149‑1 (MQ=255)                         cATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGACGGGCGCGGCAAGc                                                                                                                          >  2:287830/1‑149 (MQ=255)                             gCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCTCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGGGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCcgcg                                                                                                                      <  8:95360/149‑1 (MQ=255)                             gCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCcgcg                                                                                                                      <  2:156835/149‑1 (MQ=255)                               tttCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGcc                                                                                                                    >  5:157066/1‑149 (MQ=255)                                  ctcCTTCCGCAAAACCTTCAGGGGTAACAGTCTTGGAGATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGccc                                                                                                                   <  8:245504/147‑1 (MQ=255)                                    ccTTACGCAAAACATTCAGGGGTAAATGTCTTGGATATCGGTCCGGGGTCGCGGAGGACTACCTTGTCCCCGGTTACTCGCCGCACATGGCTGGACAGGACGTGCGCGGCGTGCATAAACGCGATGGGCGCGGCTTGCCGCGCCCTTc                                                                                                                <  6:72053/148‑1 (MQ=255)                                     cTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCa                                                                                                              <  1:207549/149‑1 (MQ=255)                                      ttACGCAAAACATTCAGGGGTATCAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAg                                                                                                             >  1:41878/1‑149 (MQ=255)                                            aaaaCATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAgcg                                                                                                       >  6:207456/1‑149 (MQ=255)                                                  ttCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCAGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCCGCGCCTTAc                                                                                                 >  8:134175/1‑149 (MQ=255)                                                   tCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACt                                                                                                >  3:184837/1‑149 (MQ=255)                                                     aGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTc                                                                                               <  7:134175/148‑1 (MQ=255)                                                       gggTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGcc                                                                                            >  3:199267/1‑149 (MQ=255)                                                       gggTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGcc                                                                                            <  6:157066/149‑1 (MQ=255)                                                           aaCAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGt                                                                                        >  7:241968/1‑149 (MQ=255)                                                                  ttGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCt                                                                                          <  5:133210/140‑1 (MQ=255)                                                                  ttGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCt                                                                                          >  6:133210/1‑140 (MQ=255)                                                                    ggATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGCGAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCa                                                                                  <  1:252962/146‑1 (MQ=255)                                                                     gATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGa                                                                               <  2:41878/148‑1 (MQ=255)                                                                          cGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGTCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATc                                                                          <  4:184837/148‑1 (MQ=255)                                                                            ggCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATc                                                                          >  6:177375/1‑146 (MQ=255)                                                                                   gTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAAc                                                                <  5:177375/149‑1 (MQ=255)                                                                                      gcgGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAAcgcg                                                             <  4:199267/149‑1 (MQ=255)                                                                                         gacgacgacCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTa                                                          <  1:320862/149‑1 (MQ=255)                                                                                           cgacgacCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATg                                                        <  5:207456/149‑1 (MQ=255)                                                                                                 ccATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAgcgc                                                  >  5:274420/1‑149 (MQ=255)                                                                                                   aTGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAgcgcgc                                                <  1:287830/149‑1 (MQ=255)                                                                                                       ccccGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTAc                                            <  3:280858/149‑1 (MQ=255)                                                                                                               gctcgccgcgcaggtcctgtcctgccttgtgcggcgagCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCt                                    >  2:283819‑M2/39‑149 (MQ=255)                                                                                                                CTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTc                                   <  2:170554‑M1/149‑1 (MQ=255)                                                                                                                   gccgcgcaggtcctgtcctgccttgtgcggcgagCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCATCCAGGCAGCGCCTCACTCGCCCTGTCGGGCAGGAGCATCCAGATCg                                                                   <  7:265624‑M2/80‑1 (MQ=255)                                                                                                                   gccgcgcaggtcctgtcctgccttgtgcggcgagCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCATCCAGGCAGCGCCTCACTCGCCCTGTCGGGCAGGAGCATCCAGATCg                                                                   >  8:265624‑M2/35‑114 (MQ=255)                                                                                                                   GCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAg                                <  5:348824‑M1/149‑1 (MQ=255)                                                                                                                       CACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGCACGAAAGCGGTATTCAGCGCGCGTACGGGCCGCTccagggac                            <  8:326573‑M1/149‑4 (MQ=255)                                                                                                                            ggCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAg                                <  4:246172/140‑1 (MQ=255)                                                                                                                            ggCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAg                                >  3:246172/1‑140 (MQ=255)                                                                                                                                             gcggcgagCAGAAACGCTAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGACTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTCGAGCACCACCGaaa      <  7:326629‑M2/141‑1 (MQ=255)                                                                                                                                                gcgagCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGATCGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTCGAGCACCACCGAAACCt   <  6:98529‑M2/144‑1 (MQ=255)                                                                                                                                                 cgagCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTCGAGCACCACCGAAACCtt  <  1:170554‑M2/145‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                 GGCGCACCGACGAGTCAGAATCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTCGAGCACCACCGAAACCTT  >  NC_002947/5080109‑5080401

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.