New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5502917	54 (0.980)	3 (0.060)	3/236	NT	5.1%	coding (365/432 nt)	PP_4837	hypothetical protein
	?	NC_002947	= 5502938	61 (1.200)					coding (386/432 nt)	PP_4837	hypothetical protein

ACGGCCACGGCGGCGATGGCCAGTTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5502761‑5502917 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaccagggAATACAGCCTGCCGGGCATGGCCCTGGTGCGTTGGCGCAAGCAGGTGGGTGGTGGGGGCGATGCTGCCGGCGCTGAGCGGGCTGAGGGCCTGGGGCAGGGCCGGGCAGTTGAACAACAGGCTGCAGTAACCGCACTTTTCCCACA  <  NC_002947/5502938‑5502794                                                                                                                                                                                                                                                                                                                ACGGCCACGGCGGCGATGGCCAGTTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAAC                                                                                                                                                            <  4:140572/148‑1                                       GAAAAGTGTGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGAATACAGCCTGCCGGGCATGGCCCTGGTGC                                                                                                                     <  4:73825/149‑1                                                                                            CCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGAATACAGCCTGCCGGGCATGGCCCTGGTG                                                                                                                      <  1:219247/95‑1                                                                                            CCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGAATACAGCCTGCCGGGCATGGCCCTGGTG                                                                                                                      >  2:219247/1‑95                                                                                                                                                      CACCAGGGAATACAGCCTGCCGGGCATGGCCCTGGTGCGTTGGCGCAAGCAGGTGGGTGGTGGGGGCGATGCTGCCGGCGCTGAGCGGGCTGAGGGCCTGTGGCAGGGCCGGGCAGTTGAACAACAGGCTGCAGTAACCGCACTTTTCC      <  1:84395/149‑1                                                                                                                                                      CACCAGGGAATACAGCCTGCCGGGCATGGCCCTGGTGCGTTGGCGCAAGCAGGTGGGTGGTGGGGGCGATGCTGCCGGCGCTGAGCGGGCTGAGGGCCTGGGGCAGGGCCGGGCAGTTGAACAACAGGCTGCAGTAACCGCACTTTTCC      <  3:256429/149‑1                                                                                                                                                         CAGGGAATACAGCCTGCCGGGCATGGCCCTGGTGCGTTGGCGCAAGCAGGTGGGTGGTGGGGGCGATGCTGCCGGCGCTGAGCGGGCTGAGGGCCTGGGGCAGGGCCGGGCAGTTGAACAACAGGCTGCAGTAACCGCACTTTTCCCA    >  2:59183/1‑148                                                                                                                                                          AGGGAATACAGCCTGCCGGGCATGGCCCGGGTGCGTTGGCGCAAGCAGGGGGGTGGTGGGGGCGATGCTGCCGGCGCTGAGCGGGCTGAGGGCCTGGGGCAGGGCCGGGCAGTTGAACAACAGGCTGCAGTAACCGCACTTTTCCCACA  <  2:65589/149‑1                                                                                                                                                                                                                                                                                                                ACGGCCACGGCGGCGATGGCCAGTTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5502761‑5502917 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaccagggAATACAGCCTGCCGGGCATGGCCCTGGTGCGTTGGCGCAAGCAGGTGGGTGGTGGGGGCGATGCTGCCGGCGCTGAGCGGGCTGAGGGCCTGGGGCAGGGCCGGGCAGTTGAACAACAGGCTGCAGTAACCGCACTTTTCCCACA  <  NC_002947/5502938‑5502794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.