New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5654307 =	54 (0.980)	4 (0.080)	4/244	NT	7.7%	coding (168/1164 nt)	pgk	phosphoglycerate kinase
	?	NC_002947	5654350 =	45 (0.850)					coding (125/1164 nt)	pgk	phosphoglycerate kinase

ATGACCGACCTCGACCTGCAAGGTAAGCGCGTACTGATCCGCGAAGACCTCAACGTGCCTGTGAAGGACGGTGTGGTAGCCAGCGATGCGCGTATCCTGGCAGCGCTGCCGACCATCAAGCTGGCCCTGGAGAAGGGCGCAGCGGTAATGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5654459‑5654307 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggtcGGCAGCGCTGCCAGGATACGCGCATCGCTGGCTACCACACCGTCCTTCACAGGCACGTTGAGGTCTTCGCGGATCAGTACGCGCTTACCTTGCAGGTCGAGGTCGGTCATCTTCAACACGGTCATGAATGCAGTCCTTCAGGGCTGT  >  NC_002947/5654350‑5654496                                                                                                                                                                                                                                                                                                              ATGACCGACCTCGACCTGCAAGGTAAGCGCGTACTGATCCGCGAAGACCTCAACGTGCCTGTGAAGGACGGTGTGGTAGCCAGCGATGCGCGTATCCTGGCAGCGCTGCCGACCATCAAGCTGGCCCTGGAGAAGGGCGCAGCGGTAAT                                                                                                                                                         <  5:345515/149‑1   GACCGACCTCGACCTGCAAGGTAAGCGCGTACTGATCCGCGAAGACCTCAACGTGCCTGTGAAGGACGGTGTGGTAGCCAGCGATGCGCGTATCCTGGCAGCGCTGCCGACCATCAAGCTGGCCCTGGAGAAGGGCGCAGCGGTAATGG                                                                                                                                                       >  5:46153/1‑149     CCGACCTCGACCTGCAAGGTAAGCGCGTACTGATCCGCGAAGACCTCAACGTGCCTGTGAAGGACGGTGTGGTAGCCAGCGATGCGCGTATCCTGGCAGCGCTGCCGACCATCAAGCTGGCCCTGGAGAAGGGCGCAGCGGTAATGGTC                                                                                                                                                     <  8:198100/149‑1                                                                                                             CCGACCATCAAGCTGGCCCTGGAGAAGGGCGCAGCGGTAATGGTCGGCAGCGCTGCCAGGATACGCGCATCGCTGGCTAC                                                                                                                  >  7:161056/1‑80                                                                                                             CCGACCATCAAGCTGGCCCTGGAGAAGGGCGCAGCGGTAATGGTCGGCAGCGCTGCCAGGATACGCGCATCGCTGGCTAC                                                                                                                  <  8:161056/80‑1                                                                                                              CGACCATCAAGCTGGCCCTGGAGAAGGGCGCAGCGGTAATGGTCGGCAGCGCTGCCAGGATACGCGCATCGCTGGCTACCACACCGTCCTTCACAGGCACGTTGAGGTCTTCGCGGATCAGTACGCGCTTACCTTGCAGGTCGAGGTCG                                            >  2:279103/1‑149                                                                                                                              CCTGGAGAAGGGCGCAGCGGTAATGGTCGGCAGCGCTGCCAGGATACGCGCATCGCTGGCTACCACACCGTCCTTCACAGGCACGTTGAGGTCTTCGCGGATCAGTACGCGCTTACCTTGCAGGTCGAGGTCGGTCATCTTCAACACGG                            <  1:279103/149‑1                                                                                                                                                      GGTCGGCAGCGCTGCCAGGATACGCGCATCGCTGGCTACCACACCGTCCTTCACAGGCACGTTGAGGTCTTCGCGGATCAGTACGCGCTTACCTTGCAGGTCGAGGTCGGTCATCTTCAACACGGTCATGAATGCAGTCCTTCAGGGCT    >  3:270539/1‑149                                                                                                                                                        TCGGCAGCGCTGCCAGGATACGCGCATCGCTGGCTACCACACCGTCCTTCACAGGCACGTTGAGGTCTTCGCGGATCAGTACGCGCTTACCTTGCAGGTCGAGGTCGGTCATCTTCAACACGGTCATGAATGCAGTCCTTCAGGGCTGT  <  3:297792/149‑1                                                                                                                                                                                                                                                                                                              ATGACCGACCTCGACCTGCAAGGTAAGCGCGTACTGATCCGCGAAGACCTCAACGTGCCTGTGAAGGACGGTGTGGTAGCCAGCGATGCGCGTATCCTGGCAGCGCTGCCGACCATCAAGCTGGCCCTGGAGAAGGGCGCAGCGGTAATGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5654459‑5654307 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggtcGGCAGCGCTGCCAGGATACGCGCATCGCTGGCTACCACACCGTCCTTCACAGGCACGTTGAGGTCTTCGCGGATCAGTACGCGCTTACCTTGCAGGTCGAGGTCGGTCATCTTCAACACGGTCATGAATGCAGTCCTTCAGGGCTGT  >  NC_002947/5654350‑5654496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.