New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5774063	40 (0.720)	3 (0.060)	3/244	NT	7.2%	coding (626/657 nt)	betI	choline‑responsive transcriptional repressor BetI
	?	NC_002947	= 5774094	39 (0.740)					coding (657/657 nt)	betI	choline‑responsive transcriptional repressor BetI

AGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5773911‑5774063 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgcgTCATGCTCCTGCCGGGTTGGCAAGGGCCCTGCGCGCATTGTCAGCAGCCTGGTCGTTTGTGCCCAGGGTGTGCTGCTTGGCCAGTTGTAGTTCCATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGA  <  NC_002947/5774094‑5773948                                                                                                                                                                                                                                                                                                              AGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATG                                                                                                                                                         <  6:307523/149‑1   CCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCG                                                                                                                                                       >  1:237860/1‑149    CCTGATCGACGGTTTGTGGCTGCGAGGCGCCCTGTCCGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTCGGCACAAACGACCAGGATGCTGACAATGAGC                                                                                                                                                      >  8:307706/1‑149                               CGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAAT                                                                                                                                                          >  7:236599/1‑118                               CGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAAT                                                                                                                                                          <  8:236599/118‑1                                          tTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGTCATGCTCCTGCCGGGTTGGCAAGGGCCCTGCGCGCA                                                                                                                <  2:115117/148‑1                                                                                   GAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGTCATGCTCCTGCCGGGTTGGCAAGGGCCCTGCGCGCATTGTCA                                                                                                          >  1:7141/1‑114                                                                                   GAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGTCATGCTCCTGCCGGGTTGGCAAGGGCCCTGCGCGCATTGTCA                                                                                                          <  2:7141/114‑1                                                                                                                                                      CGCGTCATGCTCCTGCCGGGTTGGCAAGGGCCCTGCGCGCATTGTCAGCAGCCTGGTCGTTTGTGCCCAGGGTGTGCTGCTTGGCCAGTTGTAGTTCCATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCC    <  7:197505/149‑1                                                                                                                                                         GTCATGCTCCTGCCGGGTTGGCAAGGGCCCTGCGCGCATTGTCAGCAGCCTGGTCGTTTGTGCCCAGGGTGTGCTGCTTGGCCAGTTGTAGTTCCATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGA  >  5:236555/1‑148                                                                                                                                                                                                                                                                                                              AGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5773911‑5774063 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgcgTCATGCTCCTGCCGGGTTGGCAAGGGCCCTGCGCGCATTGTCAGCAGCCTGGTCGTTTGTGCCCAGGGTGTGCTGCTTGGCCAGTTGTAGTTCCATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGA  <  NC_002947/5774094‑5773948

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.