New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5774063	40 (0.720)	3 (0.060)	3/244	NT	7.2%	coding (626/657 nt)	betI	choline‑responsive transcriptional repressor BetI
	?	NC_002947	= 5774094	39 (0.740)					coding (657/657 nt)	betI	choline‑responsive transcriptional repressor BetI

ACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGCCAAACCACACACTGCACTTGCGAGGACACTATGGCCCGTTTCGGAACGCAAAAACTCTACATTGATGGCGCTTACGTCGACGCTGGCAGCGATGCCACTTTCGAA  >  NC_002947/5773922‑5774208                                                                                                                                              |                                                                                                                                                      aCGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGcc                                                                                                                                                <  7:65367/149‑1 (MQ=255)   ggTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCt                                                                                                                                              >  7:40669/1‑149 (MQ=255)         tgGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCa                                                                                                                                      <  7:307706/148‑1 (MQ=255)           gCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAAc                                                                                                                                    <  3:294063/148‑1 (MQ=255)             tGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCg                                                                                                                                 <  3:187691/149‑1 (MQ=255)               cGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCg‑g                                                                                                                               <  7:299101/148‑1 (MQ=255)                        cTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCAt                                                                                                                      >  8:7965/1‑148 (MQ=255)                          gTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAg                                                                                                                                                    >  4:287615/1‑120 (MQ=255)                          gTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAg                                                                                                                                                    <  3:287615/120‑1 (MQ=255)                           tCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGAc                                                                                                                   >  5:236555‑M2/1‑147 (MQ=255)                             gggTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCg                                                                                                                                 <  7:340235/133‑1 (MQ=255)                             gggTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCg                                                                                                                                 >  8:340235/1‑133 (MQ=255)                             gggTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGAcgcg                                                                                                                <  7:197505‑M2/149‑5 (MQ=255)                               ttgATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGtcatgctcctgccgggttggcaagggccctgcgcgca                                                                                                                  <  2:115117‑M1/148‑38 (MQ=255)                                  aTGCATTCGACACCGACCAGGCGATACGGATTGCTTTCGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGc                                                                                                           >  7:30016/1‑149 (MQ=255)                                    gCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGcc                                                                                                          >  4:63547/1‑148 (MQ=255)                                      aTTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGCCaaa                                                                                                       >  5:195557/1‑149 (MQ=255)                                      aTTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGCCa                                                                                                         >  6:257972/1‑147 (MQ=255)                                      aTTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGCCa                                                                                                         <  5:257972/147‑1 (MQ=255)                                       ttCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGCCAAAc                                                                                                      <  7:7965/149‑1 (MQ=255)                                                   cAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGCCAAACCACACACTGCAc                                                                                          <  6:195557/149‑1 (MQ=255)                                                   cAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGCCAAACCACACACTGCAc                                                                                          >  3:119001/1‑149 (MQ=255)                                                    aGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGCCAAACCACACACTGCACt                                                                                         <  3:63547/149‑1 (MQ=255)                                                       cGATACGGATTGCTTACGTATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTTACAATGCGCGCAGGGCACTT‑‑‑GGGAACGCG‑GCAGGAGCTTGACGCGCAAGCCAAACCACAGACTGCACTTGc                                                                                      <  5:12260/149‑1 (MQ=255)                                                       cGATACGGATTGCTTACGAATACATTGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGTAGCATGACGCGCAAGCCAAACCACACACTGCAGTTGc                                                                                      <  8:40669/149‑1 (MQ=255)                                                        gATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGCCAAACCACACACTGCACTTGc                                                                                      >  3:213027/1‑148 (MQ=255)                                                         aTACGGATTGCTTTCGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGCCAAACCACACACTGCACTTGCGa                                                                                    <  8:30016/149‑1 (MQ=255)                                                              gATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGCCAAACCACACACt                                                                                              >  6:358898/1‑134 (MQ=255)                                                              gATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGCCAAACCACACACt                                                                                              <  5:358898/134‑1 (MQ=255)                                                                   cTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGCCAAACCACACACTGCACTTGCGAGGACACTATg                                                                          <  8:197505/149‑1 (MQ=255)                                                                   cTTAAGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCACTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGCCAAACCACACACTGCACTTGCGAGGACACTATg                                                                          >  2:111952/1‑149 (MQ=255)                                                                      aCGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGCCAAACCACACACTGCACTTGCGAGGACACTATGGc                                                                        <  6:244639/148‑1 (MQ=255)                                                                        gAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGtcatgctcctgccgggttggcaagggccctgcgcgcattgtca                                                                                                            >  1:7141‑M1/1‑71 (MQ=255)                                                                        gAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGtcatgctcctgccgggttggcaagggccctgcgcgcattgtca                                                                                                            <  2:7141‑M1/114‑44 (MQ=255)                                                                           tACATGGAACTACTAGTGGCCATGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGTCAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGGATGACGCGCAAGCCAAACCACACACTGCACTTGCGAGGACACTATGGCCCGttt                                                                  <  3:48948/149‑1 (MQ=255)                                                                                        aaCTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGCCAAACCACACACTGCACTTGCGAGGACACTATGGCCCGTTTCGGAACGCaaaaa                                                     <  5:352897/149‑1 (MQ=255)                                                                                           tGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGCCAAACCACACACTGCACTTGCGAGGACACTATGGCCCGTTTCGGAACGCAAAAActc                                                  >  4:341271/1‑149 (MQ=255)                                                                                               cAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGCCAAACCACACACTGCACTTGCGAGGACACTATGGCCCGTTTCGGAACGCAAAAACTCTACa                                              >  3:322479/1‑149 (MQ=255)                                                                                               cAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGCCAAACCACACACTGCACTTGCGAGGACACTATGGCCCGTTTCGGAACGCAAAAACTCTACa                                              <  2:237860/149‑1 (MQ=255)                                                                                                 agcataacacCTTGTTCAAAAACGACGAGGCTTCTGATTATGCGCTCAGGGCCCTTTCATCCAACCGGCCCAGATTCATGACGCGCAAGCCAAACCACACACTGCACTTGCGAGGACACTATGGCCCGTTTCGGAACGCAAAAACTCTa                                                <  1:111952/143‑1 (MQ=255)                                                                                                 agcagcACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGCCAAACCACACACTGCACTTGCGAGGACACTATGGCCCGTTTCg                                                                <  6:211505/129‑1 (MQ=255)                                                                                                 agcagcACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGCCAAACCACACACTGCACTTGCGAGGACACTATGGCCCGTTTCg                                                                >  5:211505/1‑129 (MQ=255)                                                                                                    agcaCACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGCCAAACCACACACTGCACTTGCGAGGACACTATGGCCCGTTTCGGAACGCAAAAACTCTACATTGAt                                         <  4:119001/149‑1 (MQ=255)                                                                                                         acacTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCACGGCCCTT‑‑‑GCCAAACCG‑GCAGGAGCATGACGCGCAAGCCAAACCACACACAGCACTTCCGAGGACACTATGGCCCGTTTCGGAACGCAAAAACTCTACATTGATGgcgc                                    >  6:166758/4‑149 (MQ=255)                                                                                                           ccTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGCCAAACCACACACTGCACTTCCGAGGACACTATGGCCCGTTTCGGAACGCAAAAACTCTACATTGATGCCGCt                                   >  1:345192/1‑148 (MQ=255)                                                                                                                              gctgctGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGCCAAACCACACACTGCACTTGCGAGGACACTATGGCCCGTTTCGGAACGCAAAAACTCTACATTGATGGCGCTTACGTCGACGCTGGCAGCGa               >  2:306388/1‑149 (MQ=255)                                                                                                                                   tgACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGAcgcgcattgtcagcagcctggtcgtttgtgcccagggtgtgctgcttggccagttgtagttccatgtattc                                             <  2:7141‑M2/114‑72 (MQ=255)                                                                                                                                   tgACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGAcgcgcattgtcagcagcctggtcgtttgtgcccagggtgtgctgcttggccagttgtagttccatgtattc                                             >  1:7141‑M2/1‑43 (MQ=255)                                                                                                                                    gACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGCCAAACCACACACTGCACTTGCGAGGACACTATGGCCCGTTTCGGAACGCAAAAACTCTACATTGATGGCGCTTACGTCGACGCTGGCAGCGATGCCAc         >  2:100642/1‑149 (MQ=255)                                                                                                                                         tGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGAcgcgcattgtcagcagcctggtcgtttgtgcccagggtgtgctgcttggccagttgtagttccatgtattcgtaagcaatccgtatcgcctggtcggtgtcgaatgcatcaa    <  2:115117‑M2/149‑113 (MQ=255)                                                                                                                                           cgcgtcatgctcctgccgggttggcaagggccctgcgcgcattgtcagcagcctggtcgtttgtgcccagggtgtgctgcttggccagttgtagttccatgtattcgtaagcaatccgtatcgcctggtcggtgtcgaatgcatcaccc      <  7:197505‑M1/149‑146 (MQ=255)                                                                                                                                           cgcgcAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGCCAAACCACACACTGCACTTGCGAGGACACTATGGCCCGTTTCGGAACGCAAAAACTCTACATTGATGGCGCTTACGTCGACGCTGGCAGCGATGCCACTTTCGaa  <  3:341271/149‑1 (MQ=255)                                                                                                                                              gtcatgctcctgccgggttggcaagggccctgcgcgcattgtcagcagcctggtcgtttgtgcccagggtgtgctgcttggccagttgtagttccatgtattcgtaagcaatccgtatcgcctggtcggtgtcgaatgcatcacccga    >  5:236555‑M1/1‑1 (MQ=255)                                                                                                                                              gcAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGCCAAACCACACACTGCACTTGCGAGGACACTATGGCCCGTTTCGGAACGCAAAAACTCTACATTGATGGCGCTTACGTCGACGCTGGCAg                  <  2:29847/130‑1 (MQ=255)                                                                                                                                              gcAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGCCAAACCACACACTGCACTTGCGAGGACACTATGGCCCGTTTCGGAACGCAAAAACTCTACATTGATGGCGCTTACGTCGACGCTGGCAg                  >  1:29847/1‑130 (MQ=255)                                                                                                                                              |                                                                                                                                                      ACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGCAGGGCCCTT‑‑‑GCCAACCCG‑GCAGGAGCATGACGCGCAAGCCAAACCACACACTGCACTTGCGAGGACACTATGGCCCGTTTCGGAACGCAAAAACTCTACATTGATGGCGCTTACGTCGACGCTGGCAGCGATGCCACTTTCGAA  >  NC_002947/5773922‑5774208

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.