New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5895417 =	61 (1.100)	4 (0.070)	4/248	NT	5.8%	coding (759/819 nt)	cysU	sulfate ABC transporter permease CysT
	?	NC_002947	5895454 =	72 (1.340)					coding (722/819 nt)	cysU	sulfate ABC transporter permease CysT

CTTCGCCCGTGGCGTGGGCGAGTATGGTTCGGTGATCTTCATTGCCGGCAACATGCCGATGAAGACCGAGATTCTGCCGCTGCTGATCATGGTCAAGCTCGACCAGTACGACTACACCGGCGCGACCGCCATCGGCGTGTTGATGCTGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5895567‑5895417 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgTAGTCGTACTGGTCGAGCTTGACCATGATCAGCAGCGGCAGAATCTCGGTCTTCATCGGCATGTTGCCGGCAATGAAGATCACCGAACCATACTCGCCCACGCCACGGGCGAAGGCCAGGGCAAAGC  >  NC_002947/5895454‑5895580                                                                                                                                                                                                                                                                                        CTTCGCCCGTGGCGTGGGCGAGTATGGTTCGGTGATCTTCATTGCCGGCAACATGCCGATGAAGACCGAGATTCTGCCGCTGCTGATCATGGTCAAGCTCGACCAGTACGACTACACCGGCGCGACCGCCATCGGCGTGTTGATGCTGG                                                                                                                                   >  7:210766/1‑149                                                                                                         AGTACGACTACACCGGCGCGACCGCCATCGGCGTGTTGATGCTGGTGTAGTCGTACTGGTCGAGCTTGACCATGATCAGCAGCGGCAGAATCTCGGTCTTCATCGGCATGTTGCCGGCAATGAAGATCACCGAACCATACTCGCCCACG                           >  4:265387/1‑149                                                                                                                 TACACCGGCGCGACCGCCATCGGCGTGTTGATGCTGGTGTAGTCGTACTGGTCGAGCTTGACCATGATCAGCAGCGGCAGAATCTCGGTCTTCATCGGCAT                                                                   <  5:225082/101‑1                                                                                                                  ACACCGGCGCGACCGCCATCGGCGTGTTGATGCTGGTGTAGTCGTACTGGTCGAGCTTGACCATGATCAGCAGCGGCAGAATCTCGGTCTTCATCGGCATGTTGCCGGCAATGAAGATCACCGAACCATACTCGCCCACGCCACGGGC                   >  4:193203/1‑148                                                                                                                                  CATCGGCGTGTTGATGCTGGTGTAGTCGTACTGGTCGAGCTTGACCATGATCAGCAGCGGCAGAATCTCGGTCTTCATCGGCATGTTGCCGGCAATGAAGATCACCGAACCATACTCGCCCACGCCACGGGCGAAGGCCAGGGCAAAGC  <  3:193203/149‑1                                                                                                                                                                                                                                                                                        CTTCGCCCGTGGCGTGGGCGAGTATGGTTCGGTGATCTTCATTGCCGGCAACATGCCGATGAAGACCGAGATTCTGCCGCTGCTGATCATGGTCAAGCTCGACCAGTACGACTACACCGGCGCGACCGCCATCGGCGTGTTGATGCTGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5895567‑5895417 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgTAGTCGTACTGGTCGAGCTTGACCATGATCAGCAGCGGCAGAATCTCGGTCTTCATCGGCATGTTGCCGGCAATGAAGATCACCGAACCATACTCGCCCACGCCACGGGCGAAGGCCAGGGCAAAGC  >  NC_002947/5895454‑5895580

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.