New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5946013	50 (0.900)	4 (0.070)	4/248	NT	7.7%	coding (996/1467 nt)	ubiD	3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase
	?	NC_002947	= 5946060	47 (0.880)					coding (949/1467 nt)	ubiD	3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase

TCACCACCGCCATGCGGTACGAGCAGCCTTCCGGCGGCAGGTAGAAGTCGGTGATTTCCGGGAACTGCTTCTGCAGGATCGGCACGAACACTTCGTTCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5945913‑5946013 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcACCTACACCGGCCGGCCGCCAGATGAGCCGGCCATTCTCGGCGTGGCGCTGAACGAAGTGTTCGTGCCGATCCTG  <  NC_002947/5946060‑5945986                                                                                                                                                                                  TCACCACCGCCATGCGGTACGAGCAGCCTTCCGGCGGCAGGTAGAAGTCGGTGATTTCCGGGAACTGCTTCTGCAGGATCGGCACGAACACTTCGTTCAGCACCTACACCGGCCGGTCGCCAGATGAGCCGGCCATTCTCGGCGTGGCG                             >  6:133147/1‑149            ATGCGGTACGAGCAGCCTTCCGGCGGCAGGTAGAAGTCGGTGATTTCCGGGAACTGCTTCTGCAGGATCGGCACGAACACTTCGTTCAGCACCTACACCGGCCGGTCGCCAGATGAGCCGGCCATTCTCGGCGTGGCGCTGAACGAAGT                  <  5:133147/149‑1                                       AGGTAGAAGTCGGTGATTTCCGGGAACTGCTTCTGCAGGATCGGCACGAACACTTCGTTCAGCACCTACACCGGCCGGCCGCCAGATGAGCCGGCCATTCTCGGCGTGGCGCTGAA                        >  5:324361/1‑116                                       AGGTAGAAGTCGGTGATTTCCGGGAACTGCTTCTGCAGGATCGGCACGAACACTTCGTTCAGCACCTACACCGGCCGGCCGCCAGATGAGCCGGCCATTCTCGGCGTGGCGCTGAA                        <  6:324361/116‑1                                                                                                  CAGCACCTACACCGGCCGGCCGCCAGATGAGCCGGCCATTCTCGGCGTGGCGCTGAACGAAGTGTTCGTGCCGATCCTG  <  3:138335/79‑1                                                                                                  CAGCACCTACACCGGCCGGCCGCCAGATGAGCCGGCCATTCTCGGCGTGGCGCTGAACGAAGTGTTCGTGCCGATCCTG  >  4:138335/1‑79                                                                                                                                                                                  TCACCACCGCCATGCGGTACGAGCAGCCTTCCGGCGGCAGGTAGAAGTCGGTGATTTCCGGGAACTGCTTCTGCAGGATCGGCACGAACACTTCGTTCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5945913‑5946013 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcACCTACACCGGCCGGCCGCCAGATGAGCCGGCCATTCTCGGCGTGGCGCTGAACGAAGTGTTCGTGCCGATCCTG  <  NC_002947/5946060‑5945986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.