| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 594783 = | 36 (0.650) | 5 (0.100) | 4/226 | NT | 12.9% | intergenic (‑22/+105) | PP_0505/PP_0506 | hypothetical protein/ABC transporter permease |
| ? | NC_002947 | 594844 = | 36 (0.740) | intergenic (‑83/+44) | PP_0505/PP_0506 | hypothetical protein/ABC transporter permease | |||||
CGCCAGTTGTGGCGGGATGACCGGGGCACCTTCAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTCAGCCAGCGATTGCCGGTAAG > NC_002947/594639‑594931 | gctggctatcatcctgggggccgcgttgctgatgggcagcgtgccggcgtggcgggcttaccggcaatcgctggctgacggcctgtccatacacctctgagtgcgcgtaatgatcaaacacctcaccgcctgcttcgcgggcacGccc > 6:175696‑M1/145‑148 (MQ=255)gctggctatcatcctgggggccgcgttgctgatgggcagcgtgccggcgtggcgggcttaccggcaatcgctggctgacggcctgtccatacacctctgagtgcgcgtaatgatcaaacacctcaccgcctgcttcgcgggcacGcc > 6:310869‑M1/145‑147 (MQ=255) tatcatcctgggggccgcgttgctgattggcagcgtgccggcgtggcggtcataccgccaatagctggctgacgccctgtcaatacacctctgagtgcgcgtaatgatcaaacacctcaccaacagctactcgggcacGCCCGCACCca < 8:165675‑M1/11‑1 (MQ=255) tatcatcctgggggccgcgttgctgatgggcagcgtgccggcgtggcgggcttaccggcaatcgctggctgacggcctgtccatacacctctgagtgcgcgtaatgatcaaacacctcaccgcctgcttcgcgggcacGCCCGCTCCca < 2:137292‑M1/11‑1 (MQ=255) tatcatcctgggggccgcgttgctgatgggcagcgtgccggcgtggcgggcttaccggcaatcgctggctgacggcctgtccatacacctctgagtgcgcgtaatgatcaaacacctcaccgcctgcttcgcgggcacGCCCGCTCCca < 2:132045‑M1/11‑1 (MQ=255) tgGCGGGATGACCGGGGCACCTTCAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAg < 6:224945/149‑1 (MQ=255) atcctgggggccgcgttgctgatgggcagcgtgccggcgtggcgggcttaccggcaatcgctggctgacggcctgtccatacacctctgagtgcgcgtaatgatcaaacacctcaccgcctgcttcgcgggcacGCCCGCTCCCACAgg < 3:297518‑M1/15‑1 (MQ=255) gCGGGATGACCGGGGCACCTTCAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAgg > 5:365413/1‑148 (MQ=255) aCCGGGGCACCTTCAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGcac > 7:276158/1‑148 (MQ=255) cTTCAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAg > 2:21544/1‑149 (MQ=255) gCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTcc < 2:237250/144‑1 (MQ=255) gCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTcc > 1:237250/1‑144 (MQ=255) gCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCtgtg > 2:10812/1‑149 (MQ=255) gCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCtgtg > 1:72460/1‑149 (MQ=255) cgggcttaccggcaatcgctggctgacggcctgtccatacacctctgagtgcacgtaatgatcaaacacctcaccgcctgcttcgcgggcacGCCCGCTCCCACAgg < 2:278405‑M1/15‑1 (MQ=255) cgggcttaccggcaatcgctggctgacggcctgtccatacacctctgagtgcacgtaatgatcaaacacctcaccgcctgcttcgcgggcacGCCCGCTCCCACAgg > 1:278405‑M1/93‑107 (MQ=255) cAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGa < 8:237/145‑1 (MQ=255) cAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGa > 7:237/1‑145 (MQ=255) cAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCgg < 4:13603/149‑1 (MQ=255) gcttaccggcaatcgctggctgacggcctgtccatacacctctgagtgcgcgtaatgatcaaacacctcaccgcctgcttcgcgggcacGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCggg > 4:297518‑M1/90‑149 (MQ=255) aGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCggg > 1:126880/1‑149 (MQ=255) ccTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATCTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCAGTGGGAGCGGGCGTg > 4:60715/1‑149 (MQ=255) ttGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTcc > 6:230616/1‑130 (MQ=255) ttGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTcc < 5:230616/130‑1 (MQ=255) cggcaatcgctggctgacggcctgtccatacacctctgagtgcgcgtaatgatcaaacacctcaccgcctgcttcgcgggcatGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGa > 1:144923‑M1/84‑138 (MQ=255) cggcaatcgctggctgacggcctgtccatacacctctgagtgcgcgtaatgatcaaacacctcaccgcctgcttcgcgggcatGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGa < 2:144923‑M1/55‑1 (MQ=255) gTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCaaa < 8:256823/112‑1 (MQ=255) gTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCaaa > 7:256823/1‑112 (MQ=255) gcggcCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCa < 8:276158/149‑1 (MQ=255) gcCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGc > 6:292171/1‑149 (MQ=255) tgacggcctgtccatacacctctgagtgcgcgtaatgatcaaacacctcaccgcctgcttcgcgggcacGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGgctccccgt < 7:303909‑M1/51‑4 (MQ=255) tgacggcctgtccatacacctctgagtgcgcgtaatgatcaaacacctcaccgcctgcttcgcgggcacGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGgctccccgt > 8:303909‑M1/70‑117 (MQ=255) aTAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGt > 1:55339/1‑148 (MQ=255) aTAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGCGCATGCCCCCTCCCACAGGTACTGCACAAGCTCCAAACCCTGCGGGGCTCCCTGTGGGAGCGGGCCTGCCCGCGAAGCAGGCGGt > 1:146496/1‑148 (MQ=255) aTAGAGGCATCGCTACAAGCAACAGCAAGGCCAGCAGCATGTGCATAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTCCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGt > 7:1422/1‑148 (MQ=255) gCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGgtgt > 7:59853/1‑149 (MQ=255) ccAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGGGGGCATGCCCGCTCCCACAGGTACTTCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGTAGGCGGTGAGGTGTTTGATCAtt < 8:305770/149‑1 (MQ=255) cagcaacagcaaGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACaa > 3:312889/1‑76 (MQ=255) cagcaacagcaaGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACaa < 4:312889/76‑1 (MQ=255) caaGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACt > 7:222265/1‑148 (MQ=255) gcacgcagcaTGGGCTTTGCGGTCCTCTTGGGGGGCATGCCCGCTCCCCCAGGTAGTGCACATGGTCCAACGCCTGGGGGGCTCCCTGTGGGTGGGGGGGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCaga < 8:1422/144‑1 (MQ=255) gCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCagag < 8:59853/149‑1 (MQ=255) gCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCagag < 5:292171/149‑1 (MQ=255) agcaTGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTAt < 2:55339/149‑1 (MQ=255) aTGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTCCACAAGCTCCAACCCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGa < 6:365413/149‑1 (MQ=255) ttGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGGACTGCACAAGCTCCCAAGCCGGCGGGGCTCCCTGTGGGAGCGGGCGGGCCCGCGAAGAAGGCGGTGAGGGGGTGGAGCAGGACGCGCACTCAGAGGGGGCTGGACAGGCCg > 7:148270/1‑149 (MQ=25) ctctTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTcagccag > 1:57515/1‑149 (MQ=255) ctTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTCAGCCAGCg > 7:152985/1‑149 (MQ=255) ttCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGAGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTCAGCCAGCGa > 6:235048/1‑149 (MQ=255) ggCATCCCCGCTCCCACCGTTACTGCACACGCACCAACGCCTGGGGGGCGCCGTGTGGGAGCGGGCGGGCCCGCGAGGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTCAGCCAGCGATTGCCg < 2:72460/149‑1 (MQ=255) aTGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTCAGCCAGCGATTGCCGGt > 6:142234/1‑148 (MQ=255) GCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTCAGCCAGCGATTGCCGGTAAg < 6:92218‑M1/149‑1 (MQ=255) | CGCCAGTTGTGGCGGGATGACCGGGGCACCTTCAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTCAGCCAGCGATTGCCGGTAAG > NC_002947/594639‑594931 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |