New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	737380 =	49 (0.880)	5 (0.090)	4/246	NT	9.7%	coding (471/708 nt)	PP_0629	membrane protein
	?	NC_002947	737416 =	46 (0.860)					coding (507/708 nt)	PP_0629	membrane protein

GCGACAAGACCTGGCGGCGTTGGGGGTGAACGGCTTGATGCTGATTGGTTTGCCGGTGCTGATTACTGAGGTGTGCGCGATAGTGGTCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGCCCTGCCGGAATGGCTCAGCGACTTTGTCGGCTACCTGTGGCTGATGATGTTCCCCGAGGCGTTCATCAACGGCA  >  NC_002947/737233‑737519                                                                                                                                                    |                                                                                                                                             tccagccactcggggcaaaacaccaccagcgcacttatcaccatgccgttgatgaacgcctcggggaacatcatcagccacaggtagccgacaaagtcgctgagccattccggcagggcaaaccgcccgtcgagccacaacaccccta                                                                                                                                              >  1:83708‑M1/148‑148 (MQ=255)   cagccactcggggcaaaacaccaccagcgcacttatcaccatgccgttgatgaacgcctcggggaacatcatcagccacaggtagccgacaaagtcgctgagccattccggcagggcaaaccgcccgtcgagccacaacacccctA‑gcg                                                                                                                                          >  8:104435‑M1/146‑149 (MQ=255)           cTGGCGGCGTTGGGGGTGAACGGCTTGATGCTGATTGGTTTGCCGGTGCTGATTACTGAGGTGTGCGCGATAGTGGTCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCTGGGTTCTTCCCGGCA‑GCGCTCACCGt                                                                                                                                  >  4:318256/1‑149 (MQ=255)            tGGCGGCGTTGGGGGTGAACGGCTTGATGCTGATTGGTTTGCCGGTGCTGATTACTGAGGTGTGCGCGATAGTGGTCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTg                                                                                                                                 >  7:109283/1‑149 (MQ=255)                         ggTGAACGGCTTGATGCTGATTGGTTTGCCGGTGCTGATTACTGAGGTGTGCGCGATAGTGGTCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTAc                                                                                                                    >  3:319709/1‑149 (MQ=255)                          gTGAACGGCTTGATGCTGATTGGTTTGCCGGTGCTGATTACTGAGGTGTGCGCGATAGTGGGCGAGCGAGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTAcc                                                                                                                   <  7:232950/149‑1 (MQ=255)                           tGATCGGCTTGATGCTGATTGGTTTGCCGGTGCTGATTACTGAGGTGTGCGCGATAGTGGTCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACcg                                                                                                                  <  3:318256/149‑1 (MQ=255)                                     gATGCTGATTGGTTTGCCGGTGCTGATTACTGAGGTGTGCGCGATAGTGGTCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAg                                                                                                        >  6:320412/1‑149 (MQ=255)                                      tcaccatgccgttgatgaccgcctcggggaacatcatcagccacaggtagccgacaaagtcgctgagccattccggcagggcaaaccgcccgtcgagccacaacacccctA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAgg                                                                                                       >  6:114943‑M1/111‑149 (MQ=255)                                       tGCTGATTGGTTTGCCGGTGCTGATTACTGAGGTGTGCGCGATAGTGGTCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAggg                                                                                                      <  4:319709/149‑1 (MQ=255)                                        gCTGATTGGTTTGCCGGTGCTGATTACTGAGGTGTGCGCGATAGTGGTCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAggg                                                                                                      <  8:109283/148‑1 (MQ=255)                                           gATTGGTTTGCCGGTGCTGATTACTGAGGTGTGCGCGATAGTGGTCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGgtgt                                                                                                  >  6:139281/1‑149 (MQ=255)                                               ggTTTGCCGGTGCTGATTACTGAGGTGTGCGCGATAGTGGTCGAGCGCGCCCAGCCGCGAAACCTGTTTGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGtgttgt                                                                                               <  6:98224/148‑1 (MQ=255)                                                        gTGCTGATTACTGAGGTGTGCGCGATAGTGGTCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACgg                                                                                     >  2:242962/1‑149 (MQ=255)                                                          gcctcggggaacatcatcagccacaggtagccgacaaagtcgctgagccattccggcagggcaaaccgcccgtcgagccacaacacccctA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAgg                                                                                                       >  5:329399‑M1/91‑129 (MQ=255)                                                          gcctcggggaacatcatcagccacaggtagccgacaaagtcgctgagccattccggcagggcaaaccgcccgtcgagccacaacacccctA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAgg                                                                                                       <  6:329399‑M1/39‑1 (MQ=255)                                                           cTGATTACTGAGGTGTGCGCGATAGTGGTCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGc                                                                                   <  1:242962/148‑1 (MQ=255)                                                            tGATTACTGAGGTGTGCGCGATAGTGGTCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCgg                                                                                 >  6:303418/1‑149 (MQ=255)                                                            ctcggggaacatcatcagccacaggtagccgacaaagtcgctgagccattccggcagggcaaaccgcccgtcgagccacaacacccctA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAg                                                                                                        <  5:216477‑M1/38‑1 (MQ=255)                                                            ctcggggaacatcatcagccacaggtagccgacaaagtcgctgagccattccggcagggcaaaccgcccgtcgagccacaacacccctA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAg                                                                                                        >  6:216477‑M1/89‑126 (MQ=255)                                                             gATTACTGAGGTGTGCGCGATAGTGGTCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGtgttgt                                                                                               <  5:249263/134‑1 (MQ=255)                                                             gATTACTGAGGTGTGCGCGATAGTGGTCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGtgttgt                                                                                               >  6:249263/1‑134 (MQ=255)                                                              aTTACTGAGGTGTGCGCGATAGTGGTCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGt                                                                                <  5:303418/148‑1 (MQ=255)                                                                  cTGAGGTGTGCGCGATAGTGGTCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGc                                                                            <  5:320412/148‑1 (MQ=255)                                                                   tGAGGTGTGCGCGATAGTGGTCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGccc                                                                          >  3:289762/1‑149 (MQ=255)                                                                   tGAGGTGTGCGCGATAGTGGTCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGccc                                                                          >  7:30149/1‑149 (MQ=255)                                                                     aGGTGTGCGCGATAGTGGTCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTgg                                                                                                                             >  1:154083/1‑96 (MQ=255)                                                                     aGGTGTGCGCGATAGTGGTCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTgg                                                                                                                             <  2:154083/96‑1 (MQ=255)                                                                                  aGTGGTCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGCCCTGCCg                                                                     >  6:327494/1‑139 (MQ=255)                                                                                  aGTGGTCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGCCCTGCCg                                                                     <  5:327494/139‑1 (MQ=255)                                                                                    tGGTCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGCCCTGCCGGAAt                                                                 <  7:186494/141‑1 (MQ=255)                                                                                    tGGTCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGCCCTGCCGGAAt                                                                 <  7:191736/141‑1 (MQ=255)                                                                                    tGGTCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGCCCTGCCGGAAt                                                                 >  8:191736/1‑141 (MQ=255)                                                                                    tGGTCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGGTGTGGCTCGACGGGCGGTTTGCCCTGCCGGAAt                                                                 >  8:186494/1‑141 (MQ=255)                                                                                       tCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGCCCTGCCGGAATGGc                                                              <  4:9653/141‑1 (MQ=255)                                                                                       tCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGCCCTGCCGGAATGGc                                                              >  3:9653/1‑141 (MQ=255)                                                                                       tCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGCCCTGCCGGAATGGCTCAGCGAc                                                      >  4:12965/1‑149 (MQ=255)                                                                                                cccAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGCCCTGCCGGAATGGCTCAGCGACTTTGTCGGc                                             <  8:30149/149‑1 (MQ=255)                                                                                                        cgAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGCCCTGCCGGAATGGCTCAGCGACTTTGTCGGCTACCtgtg                                     >  6:158572/1‑149 (MQ=255)                                                                                                        cgAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGCCCTGCCGGAATGGCTCAGCGACTTTGTCGGCTACCtgtg                                     <  5:139281/149‑1 (MQ=255)                                                                                                             ccTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGCCCTGcc                                                                      <  4:262047/111‑1 (MQ=255)                                                                                                             ccTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGCCCTGcc                                                                      >  3:262047/1‑111 (MQ=255)                                                                                                             ccTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGGGGCTCGACGGGCGGTTTGCCCTGCCGGAATGGCTCAGCGACTTTGTCGGCTACCTGTGGCtga                                <  2:109647/149‑1 (MQ=255)                                                                                                               tGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGCCCTGCCGGAATgg                                                               <  1:61811/116‑1 (MQ=255)                                                                                                               tGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGCCCTGCCGGAATgg                                                               >  2:61811/1‑116 (MQ=255)                                                                                                                         tatTTTTTGTTCGGGTTTATTCGCGGCATGCG‑TCAACGTTCTGGTTTGCGTACCGGGTGCGCTATGTGTGTTGTGGCTCGACGGGCGGTTTGCCCTGCCGGTATGGCTCAGCGACTTTGTCGGCTACCTGTGGCTGATGATTTTcccc                     <  7:336023/148‑1 (MQ=255)                                                                                                                           ttttttGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGCCCTGCCGGAATGGCTCAGCGACTTTGTCGGCTACCTGTGGCTGATGATGTTCCCCGAg                  >  5:180155/1‑149 (MQ=255)                                                                                                                           ttttttGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGCCCTGCCGGAATGGCTCAGCGACTTTGTCGGCTACCTGTGGCTGATGATGTTCCCCGAg                  >  2:234493/1‑149 (MQ=255)                                                                                                                           ttttttGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGCCCTGCCGGAATGGCTCAGCGACTTTGTCGGCTACCTGTGGCTGATGATGTTCCCCGAg                  >  2:239591/1‑149 (MQ=255)                                                                                                                                 gTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGCCCTGCCGGAATGGCTCAGCGACTTTGTCGGCTACCTGTGGCTGATGATGTTCCCCGAGGCGtt             >  1:181750/1‑148 (MQ=255)                                                                                                                                  ttCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGCCCTGCCGGAATGGCTCAGCGACTTTGTCGGCTACCTGTGGCTGATGATGTTCCCCGAGGCGTtca           >  1:212909/1‑149 (MQ=255)                                                                                                                                  ttCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGCCCTGCCGGAATGGCTCAGCGACTTTGTCGGCTACCTGTGGCTGATGATGTTCCCCGAGGCGTtc            >  6:127694/1‑148 (MQ=255)                                                                                                                                     ggggTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGCCCTGCCGGAATGGCTCAGCGACTTTGTCGGCTACCTGTGGCTGATGATGTTCCCCGAGGCGTtcatc         >  3:267000/1‑148 (MQ=255)                                                                                                                                             tcCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGCCCTGCCGGAATGGCTCAGc                                                         >  5:183019/1‑92 (MQ=255)                                                                                                                                             tcCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGCCCTGCCGGAATGGCTCAGc                                                         <  6:183019/92‑1 (MQ=255)                                                                                                                                              cccGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGCCCTGCCGGAATGGCTCAGCGACTTTGTCGGCTACCTGTGGCTGATGATGTTCCCCGAGGCGTTCATCAACGGCa  <  3:12965/146‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                             GCGACAAGACCTGGCGGCGTTGGGGGTGAACGGCTTGATGCTGATTGGTTTGCCGGTGCTGATTACTGAGGTGTGCGCGATAGTGGTCGAGCGCGCCCAGCCGCGAAACCTGTTCGTTTATATTTTTTGTTCGGGGTTCTTCCCGGCA‑GCGCTCACCGTGCTGGTTTGCGTACCGGCGGCGCTAGGGGTGTTGTGGCTCGACGGGCGGTTTGCCCTGCCGGAATGGCTCAGCGACTTTGTCGGCTACCTGTGGCTGATGATGTTCCCCGAGGCGTTCATCAACGGCA  >  NC_002947/737233‑737519

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.