New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1419958 =	49 (0.880)	3 (0.060)	3/248	NT	5.6%	coding (55/366 nt) noncoding (83/90 nt)	PP_1244 PP_mr17	hypothetical protein C4 ncRNA
	?	NC_002947	1420038 =	54 (1.010)					noncoding (3/90 nt)	PP_mr17	C4 ncRNA

GACAGGGCGCAGAGTACGTACTCTGAGGACTGGACCAGAGTGTCTTGCAGGAACTGGGTGGTATCGAGGGGTGGATCAGGGACCATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATAAACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAACGACGAGC  >  NC_002947/1419810‑1420105                                                                                                                                                     |                                                                                                                                                    ccttccttgtagggcgtttcccaaacatactgccaacccgctcaaacggttgcgacggattcggtcgcgctctagtctcggctcgtcgttgcaaaatcaacggccggctttgacaggccgacgatttcccgcacacgtgcactgtttat                                                                                                                                                     >  8:154160‑M1/149‑149 (MQ=255) ccttccttgtagggcgtttcccaaacatactgccaacccgctcaaacggttgcgacggattcggtcgcgctctagtctcggctcgtcgttgcaaaatcaacggccggctttgacaggccgacgatttcccgcacacgtgcactgtttat                                                                                                                                                     >  2:117093‑M1/149‑149 (MQ=255)  aCAGGGCGCAGAGTACGTACTCTGAGGACTGGACCAGAGTGTCTTGCAGGAACTGGGTGGTATCGAGGGGTGGATCAGGGACCATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTg                                                                                                                                                    >  7:223797/1‑149 (MQ=255)                 cgtacTCTGAGGACTGGACCAGAGTGTCTTGCAGGAACTGGGTGGTATCGAGGGGTGGATCAGGGACCATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTTGCAGCTGTACATgg                                                                                                                                      <  8:223797/148‑1 (MQ=255)                 cgtacTCTGAGGACTGGACCAGAGTGTCTTGCAGGAACTGGGTGGTATCGAGGGGTGGATCAGGGACCATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATgg                                                                                                                                      <  7:81905/148‑1 (MQ=255)                 cgtacTCTGAGGACTGGACCAGAGTGTATTGCAGGAACTGGGTGGTATCGAGGGGTGGATCAGGGACCATCATGAGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATggg                                                                                                                                     >  5:131319/1‑149 (MQ=255)                   tacTCTGAGGACTGGACCAGAGTGTCTTGCAGGAACTGGGTGGTATCGAGGGGTGGATCAGGGACCATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGtt                                                                                                                                   <  8:200538/149‑1 (MQ=255)                    acTCTGAGGACTGGACCAGAGTGTCTTGCAGGAACTGGGTGGTATCGAGGGGTGGATCAGGGACCATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATgg                                                                                                                                      >  5:8006/1‑145 (MQ=255)                    acTCTGAGGACTGGACCAGAGTGTCTTGCAGGAACTGGGTGGTATCGAGGGGTGGATCAGGGACCATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATgg                                                                                                                                      <  6:8006/145‑1 (MQ=255)                    acTCTGAGGACTGGACCAGAGTGTCTTGCAGGAACTGGGTGGTATCGAGGGGTGGATCAGGGACCATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGtt                                                                                                                                   >  4:30708/1‑148 (MQ=255)                         gAGGACTGGACCAGAGTGTCTTGCAGGAACTGGGTGGTATCGAGGGGTGGATCAGGGACCATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGa                                                                                                                                 >  2:113395/1‑145 (MQ=255)                         gAGGACTGGACCAGAGTGTCTTGCAGGAACTGGGTGGTATCGAGGGGTGGATCAGGGACCATCTTGCCCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGa                                                                                                                                 <  1:113395/145‑1 (MQ=255)                                 gACCAGAGTGTCTTGCAGGAACTGGGTGGTATCGAGGGGTGGATCAGGGACCATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCg                                                                                                                          <  1:350720/144‑1 (MQ=255)                                 gACCAGAGTGTCTTGCAGGAACTGGGTGGTATCGAGGGGTGGATCAGGGACCATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCg                                                                                                                          >  2:350720/1‑144 (MQ=255)                                 gACCAGAGTGTCTTGCAGGAACTGGGTGGTATCGAGGGGTGGATCAGGGACCATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGAt                                                                                                                     >  2:162086/1‑149 (MQ=255)                                 gACCAGAGTGTCTTGCAGGAACTGGGTGGTATCGAGGGGTGGATCAGGGACCATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGAt                                                                                                                     >  8:86712/1‑149 (MQ=255)                                        gtgtCTTGCAGGAACTGGGTGGTATCGAGGGGTGGATCAGGGACCATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGa                                                                                                               <  3:168713/148‑1 (MQ=255)                                         tgtCTTGCAGGAACTGGGTGGTATCGAGGGGTGGATCAGGGACCATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGt                                                                                                             <  6:343956/149‑1 (MQ=255)                                           tCTTGCAGGAACTGGGTGGTATCGAGGGGTGGATCAGGGACCATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCg                                                                                                                          <  6:242508/134‑1 (MQ=255)                                           tCTTGCAGGAACTGGGTGGTATCGAGGGGTGGATCAGGGACCATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCg                                                                                                                          >  5:242508/1‑134 (MQ=255)                                               gCAGGAACTGGGTGGTATCGAGGGGTGGATCAGGGACCATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCg                                                                                                       >  2:25289/1‑149 (MQ=255)                                                   gAACTGGGTGGTATCGAGGGGTGGATCAGGGACCATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGa                                                                                                                         <  1:342717/127‑1 (MQ=255)                                                   gAACTGGGTGGTATCGAGGGGTGGATCAGGGACCATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGa                                                                                                                         >  2:342717/1‑127 (MQ=255)                                                   gAACTGGGTGGTATCGAGGGGTGGATCAGGGACCATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGgcg                                                                                                    >  6:180758/1‑148 (MQ=255)                                                   gAACTGGGTGGTATCGAGGGGTGGATCAGGGACCATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGgcg                                                                                                    >  2:21566/1‑148 (MQ=255)                                                       tGGGTGGTATCGAGGGGTGGATCAGGGACCATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCacac                                                                                               >  4:55411/1‑149 (MQ=255)                                                        gggTGGTATCGAGGGGTGGATCAGGGACCATCTTGAGCATAAACATATCCAGGCTCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTAGACAGACCGAGGATCCCGGAGTAACTCGGCGCacac                                                                                               >  6:219012/1‑148 (MQ=255)                                                                tCGAGGGGTGGATCAGGGACCATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGc                                                                                       <  5:180758/148‑1 (MQ=255)                                                                          gATCAGGGACCATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAg                                                                            <  7:86712/149‑1 (MQ=255)                                                                          gATCAGGGACCATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAg                                                                            >  2:309869/1‑149 (MQ=255)                                                                                    cgtcggtgcaaaatcaacggccggcgttgacaggccgacgatttcccgcacacgtgcactgtttaTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATaaa                                                                  >  4:284808‑M1/66‑149 (MQ=255)                                                                                    cATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAATCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATaaa                                                                  <  6:131319/149‑1 (MQ=255)                                                                                    cATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCAt                                                                     <  4:160054/146‑1 (MQ=255)                                                                                    cATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCAt                                                                     >  3:160054/1‑146 (MQ=255)                                                                                        ttGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATAAACAGt                                                              <  3:55411/149‑1 (MQ=255)                                                                                          gcgcATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATAAACAGTg                                                             <  3:30708/148‑1 (MQ=255)                                                                                             cATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGt                                                                                                             >  7:54486/1‑97 (MQ=255)                                                                                             cATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGt                                                                                                             <  8:54486/97‑1 (MQ=255)                                                                                                       gccggctttgacaggccgacgatttcccgcacacgtgcactgtttaTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAgccgcc                                                                       >  2:203284‑M1/47‑125 (MQ=255)                                                                                                       gccggctttgacaggccgacgatttcccccacacgtgcactgtttaTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAgccgcc                                                                       <  1:203284‑M1/79‑1 (MQ=255)                                                                                                            gATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATAAACAGTGCACGTGTGCGGGAAAtcgt                                          >  2:39056/1‑149 (MQ=255)                                                                                                            gATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATAAACAGTGCACGTGTGCGGGAAAtcgt                                          >  3:88047/1‑149 (MQ=255)                                                                                                              tCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATAAACAGTGCACGTGTGCGGGAAAtcgtcg                                        >  4:176966/1‑149 (MQ=255)                                                                                                                aTTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATAAACAGTGCAGGTGTGCGGGAAATCGTCGGc                                      <  5:219012/149‑1 (MQ=255)                                                                                                                aTTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATAAACAGTGCACGTGTGCGGGAAATCGTCGGc                                      >  2:98433/1‑149 (MQ=255)                                                                                                                 ttGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATAAACAGTGCACGTGTGCGGGAAATCGTCGGcc                                     >  2:255140/1‑149 (MQ=255)                                                                                                                   ggAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATAAACAGTGCACGTGTGCGGGAAATCGTCGGCCt                                    <  1:25289/148‑1 (MQ=255)                                                                                                                   ggAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATAAACAGTGCACGTGTGCGGGAAATCGTCGGCCTg                                   >  4:324003/1‑149 (MQ=255)                                                                                                                         gCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCAACGTACAGACGCCATAAACAGTGCACGTGTGCGGGAAAtcgtc                                         >  2:31934/1‑137 (MQ=255)                                                                                                                                        tCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGCTCCCGGAGTAACTCGGCGCCCACGAAGGTGCCCCACGTACAGCCGCCATAAACAGTGCACGTGGGCGGGAAATCGTCGGCCTGGCAAATCCGGCAGTTGAtttt              >  8:330139/1‑149 (MQ=255)                                                                                                                                          aaaCAAGAGGTTGGCAGCTTTAAATGGGTTGAAAGACCTAGCATACCGGATTAACTCGGCGCACACGAAGGTGCCCCCCGTACAGCCGCAATAAAAATTGCACTTGTGCGGGAAATCGACGGCCTGTAAAACCAGCCCGTTGATTTTg             >  1:338896/1‑148 (MQ=255)                                                                                                                                          aaaCAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATAAACAGTGCACGTGTGCGGGAAAtcgtc                                         >  3:38534/1‑120 (MQ=255)                                                                                                                                          aaaCAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATAAACAGTGCACGTGTGCGGGAAAtcgtc                                         <  4:38534/120‑1 (MQ=255)                                                                                                                                           aaCAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATAAACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAgccggc                        <  3:171489/136‑1 (MQ=255)                                                                                                                                           aaCAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATAAACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAgccggc                        >  4:171489/1‑136 (MQ=255)                                                                                                                                                gagGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATAAACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATATTGCAacgac      >  5:43907/1‑149 (MQ=255)                                                                                                                                                gagGCTGGCAGCTGTACATGGGTAGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGAGCCCCACGTACAGCCGCCATAAACAGTGCACGAGTGCGGGAAATCGTCGGCCTGTCCAAGCCGGCCGTTGATTTTGCAacgac      >  8:160966/1‑149 (MQ=255)                                                                                                                                                 agGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATAAACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAacgac      >  3:15049/1‑148 (MQ=255)                                                                                                                                                    gTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATAAACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAACGACGAGc  <  3:324003/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GACAGGGCGCAGAGTACGTACTCTGAGGACTGGACCAGAGTGTCTTGCAGGAACTGGGTGGTATCGAGGGGTGGATCAGGGACCATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATAAACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAACGACGAGC  >  NC_002947/1419810‑1420105

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.