New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1499507 =	18 (0.330)	7 (0.140)	6/232	NT	17.2%	intergenic (+84/‑80)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
	?	NC_002947	= 6060505	51 (1.020)					intergenic (+141/+40)	PP_5311/PP_5312	signal transduction protein/hypothetical protein

CCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTGT‑T‑TCGGGCACG‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACGCGGCGCAG  >  NC_002947/1499368‑1499652                                                                                                                                               |                                                                                                                                                  cccGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCGCGGGCACGCCCGCTccc                                                                                                                                            <  5:307069/149‑1 (MQ=25) agcattaacacatagcctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaacaccggcgaagccggtgccatgcaccgcgtcgcttgtttcgcgggcacgcCCGCTcc                                                                                                                                             >  5:155144‑M1/143‑149 (MQ=255)  ccGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCGCGGGCACGCCCGCTCCca                                                                                                                                           >  7:204512/1‑149 (MQ=25)  ccGTGATGCGGCCATGCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTGC‑GCGGGCACGCCCGCTCCca                                                                                                                                           <  5:276138/149‑1 (MQ=21)   cattaacacatagcctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaacaccggcgaagccggtgccatgcaccgcgtcgcttgtttcgcgggcacgcCCGCTcc                                                                                                                                             >  8:49272‑M1/141‑147 (MQ=255)   cattaacacatagcctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaacaccggcgaagccggtgccatgcaccgcgtcgcttgtttcgcgggcacgcCCGCTcc                                                                                                                                             <  7:49272‑M1/7‑1 (MQ=255)     ttaacacatagcctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattgtggactgtgggagcgggcgtgcccgcgaacaccggcgaagccggtgccatgcaccgcgtcgcttgtttcgcgggcacgcccgcgaaacaa                                                                                                                                         >  3:201921‑M1/139‑142 (MQ=255)       aacacatagcctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaacaccggcgaagccggtgccatgcaccgcgtcgcttgtttcgcgggcacgcCCGCTCCCACAg                                                                                                                                        >  6:332531‑M1/137‑148 (MQ=255)       aacacatagcctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaacaccggcgaagccggtgccatgcaccgcgtcgcttgtttcgcgggcacgcCCGCTCCCACAg                                                                                                                                        >  1:160214‑M1/137‑148 (MQ=255)                   agagCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCGCGGGCACGCCCGCTCCCACAGACTGATTGCCAtt                                                                                                                           <  5:284184/148‑1 (MQ=21)                           aaCGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGGGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGc                                                                                                                   <  7:139748/148‑1 (MQ=21)                                                         ggCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTttgtt                                                                                    <  8:204512/149‑1 (MQ=21)                                                                              ggCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGAc                                                               >  2:328127/1‑149 (MQ=25)                                                                              ggCGTGCCCGCAAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCGAGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATgcc                                                               >  5:258189/1‑147 (MQ=25)                                                                                    cccGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCGTCGCTAACGAATCATGCCTccgt                                                          >  8:102462/1‑146 (MQ=25)                                                                                     ccGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCGCGGGCACGCCCGCTCCCACAGACTGAATGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGATGACTCGCTAACGAAACATGCCTCCCt                                                          >  8:299301/1‑147 (MQ=21)                                                                                       cgcgaacaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcCCGCTCCCACCGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAACCATGACTCCCt                                                          <  5:89318‑M1/90‑1 (MQ=255)                                                                                       cgcgaacaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcCCGCTCCCACAGACTGATTGTCATTAAGCGGGCCTATCGCTACAGTGACCGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt                                                          <  8:324835‑M1/90‑1 (MQ=255)                                                                                        gcgaacaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTttgtt                                                                                    <  2:284372‑M1/64‑1 (MQ=255)                                                                                        gcgaacaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTttgtt                                                                                    >  1:284372‑M1/56‑119 (MQ=255)                                                                                             cAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGa                                                                >  6:264013/1‑133 (MQ=37)                                                                                             cAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGa                                                                <  5:264013/133‑1 (MQ=37)                                                                                             cAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTc                                                             <  6:308649/136‑1 (MQ=37)                                                                                             cAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTGTTGTTGCCTCGCTAACGAATCATGACTc                                                             >  5:308649/1‑136 (MQ=37)                                                                                              aGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTa                                                >  8:289428/1‑148 (MQ=37)                                                                                               ggCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATc                                                                    <  8:63845/127‑1 (MQ=25)                                                                                                        gTGCATGGCACCGGCTTTGCCGGTGT‑TCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGttt                                                                                          >  8:93744/1‑96 (MQ=18)                                                                                                        gTGCATGGCACCGGCTTTGCCGGTGT‑TCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGttt                                                                                          <  7:93744/96‑1 (MQ=18)                                                                                                                   caccgcggcgcctgtttcgcgggcacgcCCGCTCCCACCGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAACCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTc                            >  6:89318‑M1/29‑148 (MQ=255)                                                                                                                             cggtgttcgcgggcacgcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACttcttc                 >  7:124088‑M1/19‑149 (MQ=255)                                                                                                                                        ggcacgcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACgcggc      >  1:328127‑M1/8‑149 (MQ=255)                                                                                                                                             gcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGa                                       <  5:246943‑M1/109‑1 (MQ=255)                                                                                                                                             gcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGa                                       >  6:246943‑M1/3‑111 (MQ=255)                                                                                                                                             gcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTcc                >  7:324151‑M1/3‑134 (MQ=255)                                                                                                                                             gcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTcc                <  8:324151‑M1/132‑1 (MQ=255)                                                                                                                                             gcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTATTCCATGACGCGGCGCAg  <  1:350745‑M1/146‑1 (MQ=255)                                                                                                                                               CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTg                                   <  2:91226‑M1/113‑1 (MQ=255)                                                                                                                                               CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTg                                   >  1:91226‑M1/1‑113 (MQ=255)                                                                                                                                               |                                                                                                                                                  CCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTGT‑T‑TCGGGCACG‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACGCGGCGCAG  >  NC_002947/1499368‑1499652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.