New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 1600438 =44 (0.790)8 (0.150) 6/244 NT 16.5% coding (746/2292 nt) bglX beta‑D‑glucoside glucohydrolase
?NC_002947 1600489 = 39 (0.740)coding (695/2292 nt) bglX beta‑D‑glucoside glucohydrolase

GCCGTCACGGGCGACGCCGTGGCGAATCAGCTCCTGGATGGCACCGTGGTCGCTGATGGTCACGCCCTTGAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGCGAAATGCTTGAC  >  NC_002947/1600290‑1600580
                                                                                                                                                     |                                                                                                                                              
ttcGTCACGGGCGACGCCGTGGCGAATCAGCTCCTGGATGGCACCGTGGTCGCTGATGGTCACGCCCTTGAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAgcg                                                                                                                                                >  1:42108/3‑149 (MQ=255)
   gTCACGGGCGACGCCGTGGAGAATAAGCTCCTGGATGGCACAGTGGTCGATGATGGTCACGCCCTTGAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGCAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGcca                                                                                                                                             >  4:68585/1‑149 (MQ=255)
    tCACGGGCGACGCCGTGGCGAATCAGCTCCTGGATGGCACCGTGGTCGCTGATGGTCACGCCCTTGAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGccac                                                                                                                                            >  5:181656/1‑149 (MQ=255)
     gcgctcgttccagggcagcagcccggccaaccccgacagcatcatggccatcgtcaagcatttcgccttgtatggcgccgtggaaggcgggcgcgactacaacacggtcgataggtgcctgccgaaaatgtacaacgactacctgcccc                                                                                                                                            <  4:50351‑M1/5‑3 (MQ=255)
      cgctcgttccagggcagcagcccggccaaccccgacagcatcatggccatcgtcaagcatttcgccttgtatggcgccgtggaaggcgggcgcgactacaacacggtcgatatgagcctgccgaaaatgtacaacgactacctGccac                                                                                                                                            >  6:156610‑M1/144‑148 (MQ=255)
        ctcgttccagggcagcagcccggccaaccccgacagcatcatggccatcgtcaagcatttcgccttgtatggcgccgtggaaggcgggcgcgactacaacacggtcgatatgagcctgccgaaaatgtacaacgactacctGCCACCAt                                                                                                                                         <  6:364385‑M1/8‑1 (MQ=255)
            gACGCCGTGGCGAATCAGCTCCTGGATGGCACCGTGGTCGCTGATGGTCACGCCCTTGAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGc                                                                                                                                    >  4:219857/1‑149 (MQ=255)
             aCGCCGTGGCGAATCAGCTCCTGGATGGCACCGTGGTCGCTGATGGTCACGCCCTTGAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGc                                                                                                                                    >  1:177719/1‑148 (MQ=255)
              ccagggcagcagcccggccaaccccgacagcatcatggccatcgtcaagcatttcgccttgtatggcgccgtggaaggcgggcgcgactacaacacgggcgatatgagccggccgaaaatgtacaccgactacctGCCACCATCCCGcc                                                                                                                                   <  6:15575‑M1/14‑1 (MQ=255)
               gCCGTGGCGAATCAGCTCCTGGATGGCACCGTGGTCGCTGATGGTCACGCCCTTGAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCAc                                                                                                                                 <  7:110424/149‑1 (MQ=255)
               gCCGTGGCGAATCAGCTCCTGGATGGCACCGTGGTCGCTGATGGTCACGCCCTTGAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCAc                                                                                                                                 <  2:40973/149‑1 (MQ=255)
                ccGTGGCGAATCAGCTCCTGGATGGCACCGTGGTCGCTGATGGTCACGCCCTTGAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCAcc                                                                                                                                <  5:90766/149‑1 (MQ=255)
                         aTCAGCTCCTGGATGGCACCGTGGTCGCTGATGGTCACGCCCTTGAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCg                                                                                                                        >  2:287103/1‑148 (MQ=255)
                          cccggccaaccccgacagcatcatggccatcgtcaagcatttcgccttgtatggcgccgtggaaggcgggcgcgactacaacacggtcgatatgagcctgccgaaaatgtacaacgactacctGCCACCATCACGCCACCGGCACCCg                                                                                                                        <  7:242978‑M1/25‑1 (MQ=255)
                            aGCTCCTGGATGGCACCGTGGTCGCTGATGGTCACGCCCTTGAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTTAGCGCCACCATCACGCCACCGGCACCCGCATc                                                                                                                    >  4:239844/1‑149 (MQ=255)
                                     aTGGCACCGTGGTCGCTGATGGTCACGCCCTTGAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAgcgcggc                                                                                                           >  1:126242/1‑149 (MQ=255)
                                      tGGCACCGTGGTCGCTGATGGTCACGCCCTTGAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAgcgcggcg                                                                                                          <  2:126242/149‑1 (MQ=255)
                                        gCACCGTGGTCGCTGATGGTCACGCCCTTGAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAgcgcggcgcg                                                                                                        <  2:116576/149‑1 (MQ=255)
                                         cACCGTGGTCGCTGATGGTCACGCCCTTGAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGa                                                                                                       >  8:155100/1‑149 (MQ=255)
                                           ccGTGGTCGCTGATGGTCACGCCCTTGAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATa                                                                                                     <  5:240034/149‑1 (MQ=255)
                                              tGGTCGCTGATGGTCACGCCCTTGAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAggg                                                                                                  <  3:219857/149‑1 (MQ=255)
                                                   gccatcgtcaagcatttcgccttgtatggcgccgtggaaggcgggcgcgactacaacacggtcgatatgagcctgccgaaaatgtacaacgactacctGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGc                                                                                              >  5:15575‑M1/99‑149 (MQ=255)
                                                   gCTGATGGTCACGCCCTTGAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTgg                                                                                               >  1:282183/1‑148 (MQ=255)
                                                   cccatcgtcaagcatttcgccttggatggcgccggggaacgcgggcgcgactagaacacgggcgatatgagcctgccgaaaatgtacaaccactacctCCCACCATCACGCCACGGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGc                                                                                              >  7:313897‑M1/99‑149 (MQ=255)
                                                   cccatcgtcaagcatttcgcctagtatggggccgtcgaaggcgggcgcgactacaacacgggcgatatgagcctgccgatattgtacaacgactacctGCCACGATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGTGTGGc                                                                                              >  8:242978‑M1/99‑149 (MQ=255)
                                                            aagcatttcgccttgtatggcgccgtggaaggcgggcgcgactacaacacggtcgatatgagcctgccgaaaatgtacaacgactacctGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAgg                                                                                           <  6:146668‑M1/54‑1 (MQ=255)
                                                            aagcatttcgccttgtatggcgccgtggaaggcgggcgcgactacaacacggtcgatatgagcctgccgaaaatgtacaacgactacctGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAgg                                                                                           >  5:146668‑M1/90‑143 (MQ=255)
                                                             aCGCCCTTGAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTTAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGt                                                                                    <  3:239844/148‑1 (MQ=255)
                                                             aCGCCCTTGAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCTGCGCGATAGGGTGGCAGGTAGTCGtt                                                                                   <  1:10097/149‑1 (MQ=255)
                                                              cGCCCTTGAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTg                                                                                  <  1:287103/149‑1 (MQ=255)
                                                               gCCCTTGAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGt                                                                                 <  6:81981/149‑1 (MQ=255)
                                                                atttcgccttgtatggcgccgtggaaggcgggcgcgactacaacacggtcgatatgagcctgccgaaaatgtacaacgactacctGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGt                                                                                 >  5:364385‑M1/86‑149 (MQ=255)
                                                                     gAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACAttt                                                                           >  6:130172/1‑149 (MQ=255)
                                                                       aGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAgg                                                                                           >  8:59807/1‑131 (MQ=255)
                                                                       aGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAgg                                                                                           <  7:59807/131‑1 (MQ=255)
                                                                         ccccACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCgg                                                                       <  6:181656/149‑1 (MQ=255)
                                                                          cccACTCATTGCGCAGCACGTCGTTCATCAGCCAGCTGATCGAGGTGCACGGTACGCCGTTGATCCAGATCAGCGCCACCATCACGCCACCCGCACCCGCATCGAGCCCGGCGCGATACGCAGGCAGGTAGACGTTGTACATTTTCgg                                                                       >  2:149773/1‑148 (MQ=255)
                                                                                ccTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCgg                                                                       <  1:270422/142‑1 (MQ=255)
                                                                                ccTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCgg                                                                       >  2:270422/1‑142 (MQ=255)
                                                                                        agcagGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGAc                                                        <  2:177719/149‑1 (MQ=255)
                                                                                            ggTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCgtg                                                    >  3:151044/1‑149 (MQ=255)
                                                                                              tCGTTCATCTGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGtgtt                                                  <  2:282183/149‑1 (MQ=255)
                                                                                                gTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGtgttg                                                 >  3:50351/1‑148 (MQ=255)
                                                                                                    atcaGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTc                                            <  1:353076/149‑1 (MQ=255)
                                                                                                       aGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGTGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTcgcg                                         >  4:163767/1‑149 (MQ=255)
                                                                                                               tgtTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCt                                  >  4:53466/1‑149 (MQ=255)
                                                                                                                 ttGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTc                                >  5:261723/1‑149 (MQ=255)
                                                                                                                 ttGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTc                                <  7:216013/149‑1 (MQ=255)
                                                                                                                    gAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGGGTTGTAGTCGCGCCCGCCTTCCAc                             >  8:42487/1‑149 (MQ=255)
                                                                                                                       gTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGgc                          >  6:202590/1‑149 (MQ=255)
                                                                                                                           ccGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCa                      <  1:149773/149‑1 (MQ=255)
                                                                                                                            aggTACGCCGTTGATAGAGTTCAGCGCCACCATCACGCCACCGTCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATGGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCAt                     <  3:68585/148‑1 (MQ=255)
                                                                                                                                    cGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTCTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGc              >  1:22681/1‑148 (MQ=255)
                                                                                                                                        gATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGc              <  6:337667/144‑1 (MQ=255)
                                                                                                                                        gATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGc              >  5:337667/1‑144 (MQ=255)
                                                                                                                                         aTCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAgg               <  7:227937/142‑1 (MQ=255)
                                                                                                                                         aTCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAgg               >  8:227937/1‑142 (MQ=255)
                                                                                                                                               ttCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCGGCCTTCCACGGCGCCATACAAGGCGAAATGCTTGAc  >  5:341810/1‑149 (MQ=255)
                                                                                                                                                     |                                                                                                                                              
GCCGTCACGGGCGACGCCGTGGCGAATCAGCTCCTGGATGGCACCGTGGTCGCTGATGGTCACGCCCTTGAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGCGAAATGCTTGAC  >  NC_002947/1600290‑1600580

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.