New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1600438 =	44 (0.790)	8 (0.150)	6/244	NT	16.5%	coding (746/2292 nt)	bglX	beta‑D‑glucoside glucohydrolase
	?	NC_002947	1600489 =	39 (0.740)					coding (695/2292 nt)	bglX	beta‑D‑glucoside glucohydrolase

TCACGCCCTTGAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGCGAAATGCTTGACGATGGCCATGATGCTGTCGGGGTTGGCCGGGCTGCTGCCCTGGAACGAGCGC  >  NC_002947/1600349‑1600632                                                                                                                                             |                                                                                                                                                aagcatttcgccttgtatggcgccgtggaaggcgggcgcgactacaacacggtcgatatgagcctgccgaaaatgtacaacgactacctGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAgg                                                                                                                                               >  5:146668‑M1/90‑143 (MQ=255) aagcatttcgccttgtatggcgccgtggaaggcgggcgcgactacaacacggtcgatatgagcctgccgaaaatgtacaacgactacctGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAgg                                                                                                                                               <  6:146668‑M1/54‑1 (MQ=255)   aCGCCCTTGAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTTAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGt                                                                                                                                        <  3:239844/148‑1 (MQ=255)   aCGCCCTTGAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCTGCGCGATAGGGTGGCAGGTAGTCGtt                                                                                                                                       <  1:10097/149‑1 (MQ=255)    cGCCCTTGAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTg                                                                                                                                      <  1:287103/149‑1 (MQ=255)     gCCCTTGAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGt                                                                                                                                     <  6:81981/149‑1 (MQ=255)     atttcgccttgtatggcgccgtggaaggcgggcgcgactacaacacggtcgatatgagcctgccgaaaatgtacaacgactacctGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGt                                                                                                                                     >  5:364385‑M1/86‑149 (MQ=255)           gAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACAttt                                                                                                                               >  6:130172/1‑149 (MQ=255)             aGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAgg                                                                                                                                               <  7:59807/131‑1 (MQ=255)             aGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAgg                                                                                                                                               >  8:59807/1‑131 (MQ=255)               ccccACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCgg                                                                                                                           <  6:181656/149‑1 (MQ=255)                cccACTCATTGCGCAGCACGTCGTTCATCAGCCAGCTGATCGAGGTGCACGGTACGCCGTTGATCCAGATCAGCGCCACCATCACGCCACCCGCACCCGCATCGAGCCCGGCGCGATACGCAGGCAGGTAGACGTTGTACATTTTCgg                                                                                                                           >  2:149773/1‑148 (MQ=255)                      ccTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCgg                                                                                                                           >  2:270422/1‑142 (MQ=255)                      ccTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCgg                                                                                                                           <  1:270422/142‑1 (MQ=255)                              agcagGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGAc                                                                                                            <  2:177719/149‑1 (MQ=255)                                  ggTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCgtg                                                                                                        >  3:151044/1‑149 (MQ=255)                                    tCGTTCATCTGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGtgtt                                                                                                      <  2:282183/149‑1 (MQ=255)                                      gTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGtgttg                                                                                                     >  3:50351/1‑148 (MQ=255)                                          atcaGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTc                                                                                                <  1:353076/149‑1 (MQ=255)                                             aGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGTGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTcgcg                                                                                             >  4:163767/1‑149 (MQ=255)                                                    tgtTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCt                                                                                      >  4:53466/1‑149 (MQ=255)                                                      ttGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTc                                                                                    <  7:216013/149‑1 (MQ=255)                                                      ttGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTc                                                                                    >  5:261723/1‑149 (MQ=255)                                                         gAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGGGTTGTAGTCGCGCCCGCCTTCCAc                                                                                 >  8:42487/1‑149 (MQ=255)                                                            gTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGgc                                                                              >  6:202590/1‑149 (MQ=255)                                                                ccGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCa                                                                          <  1:149773/149‑1 (MQ=255)                                                                 aggTACGCCGTTGATAGAGTTCAGCGCCACCATCACGCCACCGTCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATGGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCAt                                                                         <  3:68585/148‑1 (MQ=255)                                                                         cGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTCTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGc                                                                  >  1:22681/1‑148 (MQ=255)                                                                             gATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGc                                                                  <  6:337667/144‑1 (MQ=255)                                                                             gATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGc                                                                  >  5:337667/1‑144 (MQ=255)                                                                             acaacgactacctgccaccctatcgcgccgcgctcgatgcgggtgccggtggcgtgatggtggcAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGCGAAAt                                                             >  5:364385‑M2/65‑149 (MQ=255)                                                                              aTCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAgg                                                                   >  8:227937/1‑142 (MQ=255)                                                                              aTCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAgg                                                                   <  7:227937/142‑1 (MQ=255)                                                                                    ttCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCGGCCTTCCACGGCGCCATACAAGGCGAAATGCTTGAc                                                      >  5:341810/1‑149 (MQ=255)                                                                                       cctgccaccctatcgcgccgcgctcgatgcgggtgccggtggcgtgatggtggcAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGCGAAATGCtt                                                         >  5:146668‑M2/55‑143 (MQ=255)                                                                                       cctgccaccctatcgcgccgcgctcgatgcgggtgccggtggcgtgatggtggcAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGCGAAATGCtt                                                         <  6:146668‑M2/89‑1 (MQ=255)                                                                                          gccaccctatcgcgccgcgctcgatgcgggtgccggtggcgtgatggtggcAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGCGAAATGCTTGACGATGGc                                                >  5:15575‑M2/52‑149 (MQ=255)                                                                                          gccaccctatcgcgccgcgctcgatgcgggtgcccgtggcgtgatggtgggAGGTAGTGGTTGTACATTTTCGGCAGGCTCATATCGCCCGTGTTCTAGTCGCGCCCGCGTTCCCCGGCGCCATCCAAGGCGAAATGCTTGACGAtggg                                                >  7:313897‑M2/52‑148 (MQ=255)                                                                                          gccacactatcgcgccgcgctcgatgcgggtgccggtggcgtgatcgtggcAGGTAGTCGTTGTACAATATCGGCAGGCTCATATCGCCCGTGTTGTAGTCGCGCCCGCCTTCGACGGCCCCATACTAGGCGAAATGCTTGACGAtggg                                                >  8:242978‑M2/52‑148 (MQ=255)                                                                                             ACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGCGAAATGCTTGACGATGGCCAt                                             >  6:341810‑M1/1‑149 (MQ=255)                                                                                                   aCGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGCGAAATGCTTGACGATGGCCATGATGCt                                       <  5:130172/149‑1 (MQ=255)                                                                                                          cGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGCGAAATGCTTGACGATGGCCATGATGCTGTCg                                   <  8:194365/146‑1 (MQ=255)                                                                                                          cGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGCGAAATGCTTGACGATGGCCATGATGCTGTCg                                   >  7:194365/1‑146 (MQ=255)                                                                                                                ccGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGCGAAATGCTTGACGATGGCCATGATGCTGTCGGGGTTGGcc                          >  3:176318/1‑149 (MQ=255)                                                                                                                 cGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGCGAAATGCTTGACGATGGCCATGATGCTGTCGGGGTTGGCCg                         <  7:42487/149‑1 (MQ=255)                                                                                                                   cATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGCGAAATGCTTGACGATGGCCATGATGCTGTCGGGGTTGGCCggg                       <  6:261723/149‑1 (MQ=255)                                                                                                                    cgggtgccggtggcgtgatggtggcAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGCGAAATGCTTGACGATGGCCATGATGCTGTCGGGGTTGGCCggg                       <  7:242978‑M2/123‑1 (MQ=255)                                                                                                                    aTCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGCGAAATGCTTGACGATGGCCATGATGCTGTCGGGGTTGGCCGGgc                      <  3:53466/149‑1 (MQ=255)                                                                                                                    aTCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGCCGAAATGCTTGACGATGGCCATGATGCTGTCGGGGTTGGCCGGgc                      >  4:158845/1‑149 (MQ=255)                                                                                                                     tCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGCGAAATGCTTGACGATGGCCATGATGCTGTCGGGGTTGGCCGGgct                     >  6:129117/1‑149 (MQ=255)                                                                                                                           gcggcgcgATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGCGAAATGCTTGACGATGGCCATGATGCTGTCGGGGTTGGCCGGGCTGCTGcc               >  6:175911/1‑149 (MQ=255)                                                                                                                             ggcgcgATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCACACAAGGCGAAATGCTTGACGATGGCCATGATGCTGTCGGGGTTGGCCGGGCTGCTGCCCt             >  3:308106/1‑149 (MQ=255)                                                                                                                               ggcgggatggtggcAGGTAGTCGGTGTACATTTTCGGCCGGCTCATATCGCCCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGCGAAATGCTTGACGATGGCCATGATGCTGTCGGGGTTGGCCGGGCTGCTGCCCTgg           <  6:15575‑M2/135‑1 (MQ=255)                                                                                                                                  gATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGCGAAATGCTTGACGATGGCCATGATGCTGTCgggg                                <  4:213408/125‑1 (MQ=255)                                                                                                                                  gATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGCGAAATGCTTGACGATGGCCATGATGCTGTCgggg                                >  3:213408/1‑125 (MQ=255)                                                                                                                                     atggtggcAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGCGAAATGCTTGACGATGGCCATGATGCTGTCGGGGTTGGCCGGGCTGCTGCCCTGGAACGAg     <  6:364385‑M2/141‑1 (MQ=255)                                                                                                                                        gtggcAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGCGAAATGCTTGACGATGGCCATGATGCTGTCGGGGTTGGCCGGGCTGCTGCCCTGGAACGAgcg   >  6:156610‑M2/6‑148 (MQ=255)                                                                                                                                        ggggcAGGTAGTCGTTGTACATTTTCGGCAGGCACCTATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGCGAAATGCTTGACGATGGCCATGATGCTGTCGGGGTTGGCCGGGCTGCTGCCCTGGAACGAgcgc  <  4:50351‑M2/144‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                TCACGCCCTTGAAGCCCCACTCCTTGCGCAGCAGGTCGTTCATCAGCCAGGTGTTGGAGGTGGCCGGTACGCCGTTGATCGAGTTCAGCGCCACCATCACGCCACCGGCACCCGCATCGAGCGCGGCGCGATAGGGTGGCAGGTAGTCGTTGTACATTTTCGGCAGGCTCATATCGACCGTGTTGTAGTCGCGCCCGCCTTCCACGGCGCCATACAAGGCGAAATGCTTGACGATGGCCATGATGCTGTCGGGGTTGGCCGGGCTGCTGCCCTGGAACGAGCGC  >  NC_002947/1600349‑1600632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.