New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1650007 =	43 (0.780)	3 (0.060)	3/242	NT	7.4%	coding (1053/2043 nt)	PP_1446	TonB‑dependent receptor
	?	NC_002947	1650043 =	35 (0.670)					coding (1017/2043 nt)	PP_1446	TonB‑dependent receptor

GTTCTCGTTGCCTTTGGCGTCCGGGTCTACGCGGGTGTGCTCCATGCGCGCGCCCAGGCTCAGGTTCAGGCGTTCGGTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCTTGAAGGTGGTATGGACCTCGCCTTCCTCGATTTCG  >  NC_002947/1649860‑1650148                                                                                                                                                    |                                                                                                                                              tcggtcaaggtagatgctggttacaccgactacgaacacagcgaaatcgaggaaggcgaggtccataccaccttcaagaacaagggctacgaagcccgcatcgaagcccgtcaccagccgctcgggccgattgaaggggtgatcggtGc                                                                                                                                              <  6:236136‑M1/2‑1 (MQ=255)        ttGCCTTTGGCGTCCGGGTCTACGCGGGTGTGCTCCATGCGCGCGCCCAGGCTCAGGTTCAGGCGTTCGGTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGc                                                                                                                                       <  7:134188/149‑1 (MQ=255)           ccTTTGGCGTCCGGGTCTACGCGGGTGTGCTCCATGCGCGCGCCCAGGCTCAGGTTCAGGCGTTCGGTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCgg                                                                                                                                     <  1:346511/148‑1 (MQ=255)           ccTTTGGCGTCCGGGTCTACGCGGGTGTGCTCCATGCGCGCGCCCAGGCTCAGGTTCAGGCGTTCGGTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGga                                                                                                                                    <  3:268860/149‑1 (MQ=255)             tttGGCGTCCGGGTCTACGCGGGTGTGCTCCATGCGCGCGCCCAGGCTCAGGTTCAGGCGTTCGGTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGgag                                                                                                                                   >  3:50980/1‑148 (MQ=255)               tGGCGTCCGGGTCTACGCGGGTGTGCTCCATGCGCGCGCCCAGGCTCAGGTTCAGGCGTTCGGTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAAt                                                                                                                                >  2:290490/1‑149 (MQ=255)                       gggTCTACGCGGGTGTGCTCCATGCGCGCGCCCAGGCTCAGGTTCAGGCGTTCGGTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGaa                                                                                                                                 <  4:45262/140‑1 (MQ=255)                       gggTCTACGCGGGTGTGCTCCATGCGCGCGCCCAGGCTCAGGTTCAGGCGTTCGGTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGaa                                                                                                                                 >  3:45262/1‑140 (MQ=255)                        ggTCTACGCGGGTGTGCTCCATGCGCGCGCCCAGGCTCAGGTTCAGGCGTTCGGTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCgg                                                                                                                       >  5:337137/1‑149 (MQ=255)                            tACGCGGGTGTGCTCCATGCGCGCGCCCAGGCTCAGGTTCAGGCGTTCGGTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGa                                                                                                                   >  4:289453/1‑149 (MQ=255)                               gcgGGTGTGCTCCATGCGCGCGCCCAGGCTCAGGTTCAGGCGTTCGGTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCt                                                                                                                >  5:337723/1‑149 (MQ=255)                                   gtgtGCTCCATGCGCGCGCCCAGGCTCAGGTTCAGGCGTTCGGTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGc                                                                                                            <  6:337137/149‑1 (MQ=255)                                    acacagcgaaatcgaggaaggcgaggtccataccaccttcaagaacaagggctacgaagcccgcatcgaagcccgtcaccagccgctcgggccgattgaaggggtgatcggtGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCa                                                                                                           >  5:236136‑M1/113‑149 (MQ=255)                                     cacagcgaaatcgaggaaggcgaggtccataccaccttcaagaacaagggctacgaagcccgcatcgaagcccgtcaccagccgctcgggccgattgaaggggtgatcggtGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCAc                                                                                                          >  3:96396‑M1/112‑149 (MQ=255)                                           cATGCGCGCGCCCAGGCTCAGGTTCAGGCGTTCGGTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATc                                                                                                     <  2:343552/148‑1 (MQ=255)                                             tGCGCGCGCCCAGGCTCAGGTTCAGGCGTTCGGTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCAcc                                                                                                  <  5:257016/149‑1 (MQ=255)                                                  aggaaggcgaggtccataccaccttcaagaacaagggctacgaagcccgcatcgaagcccgtcaccagccgctcgggccgattgaaggggttatcggtGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGCCACCGATCACCCCTTc                                                                                             >  7:283121‑M1/99‑149 (MQ=255)                                                      ccAGGCTCAGGTTCAGGCGTTCGGTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGccc                                                                                                                                            <  8:103288/98‑1 (MQ=255)                                                      ccAGGCTCAGGTTCAGGCGTTCGGTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGccc                                                                                                                                            >  7:103288/1‑98 (MQ=255)                                                      ccAGGCTCAGGTTCAGGCGTTCGGTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATc                                                                                         <  6:337723/149‑1 (MQ=255)                                                      ccAGGCTCAGGTTCAGGCGTTCGGTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATc                                                                                         >  2:354957/1‑149 (MQ=255)                                                              aGGTTCAGGCGTTCGGTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAg                                                                                 <  4:50980/149‑1 (MQ=255)                                                                         ttCGGTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGAc                                                                      <  7:124209/149‑1 (MQ=255)                                                                            ggTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACggg                                                                   <  1:354957/149‑1 (MQ=255)                                                                             gTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGc                                                                  <  6:68009/149‑1 (MQ=255)                                                                                 cTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCg                                                              <  6:93857/149‑1 (MQ=255)                                                                                    gCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGAt                                                                                                      <  7:71225/106‑1 (MQ=255)                                                                                    gCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGAt                                                                                                      >  8:71225/1‑106 (MQ=255)                                                                                       aCTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTg                                                                           <  2:123660/130‑1 (MQ=255)                                                                                       aCTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTg                                                                           >  1:123660/1‑130 (MQ=255)                                                                                       aCTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCgg                                                        >  2:21291/1‑149 (MQ=255)                                                                                       aCTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCgg                                                        >  1:283228/1‑149 (MQ=255)                                                                                           cTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCtt                                                    >  1:242455/1‑149 (MQ=255)                                                                                                  aTGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGcc                                             >  4:90689/1‑149 (MQ=255)                                                                                                      aCAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTg                                         >  3:130664/1‑149 (MQ=255)                                                                                                      aCAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCGGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTg                                         >  6:219829/1‑149 (MQ=255)                                                                                                        aGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGt                                        >  8:126737/1‑148 (MQ=255)                                                                                                        aGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGt                                        <  7:126737/148‑1 (MQ=255)                                                                                                        aGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGAAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGtt                                       >  1:94238/1‑149 (MQ=255)                                                                                                           gcCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTg                                                                           <  4:37954/110‑1 (MQ=255)                                                                                                           gcCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTg                                                                           >  3:37954/1‑110 (MQ=255)                                                                                                                 cTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCTTGAAggt                              <  3:289453/149‑1 (MQ=255)                                                                                                                      ggTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCTTGAAGGTGGTAt                         >  1:265807/1‑149 (MQ=255)                                                                                                                                tgCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGGGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCTTGAAGGTGGTATGGACCTCGcc               <  7:87486/149‑1 (MQ=255)                                                                                                                                      aCGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCtt                                    >  5:57617/1‑122 (MQ=255)                                                                                                                                      aCGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCtt                                    <  6:57617/122‑1 (MQ=255)                                                                                                                                         aaGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCTTGAAGGTGGTATGGACCTCGCCTTCCTCGAt      >  4:277531/1‑149 (MQ=255)                                                                                                                                         aaGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCTTGAAGGTGGTATGGACCTCGCCTTCCTCGAt      >  8:87934/1‑149 (MQ=255)                                                                                                                                             cTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCTTGAAGGTGGTATGGACCTCGCCTTCCTCGATTTCg  <  2:242455/149‑1 (MQ=255)                                                                                                                                                    GCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCTTg                                   <  4:126538‑M1/109‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                              GTTCTCGTTGCCTTTGGCGTCCGGGTCTACGCGGGTGTGCTCCATGCGCGCGCCCAGGCTCAGGTTCAGGCGTTCGGTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCTTGAAGGTGGTATGGACCTCGCCTTCCTCGATTTCG  >  NC_002947/1649860‑1650148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.