New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1650007 =	43 (0.780)	3 (0.060)	3/242	NT	7.4%	coding (1053/2043 nt)	PP_1446	TonB‑dependent receptor
	?	NC_002947	1650043 =	35 (0.670)					coding (1017/2043 nt)	PP_1446	TonB‑dependent receptor

TGTGCTCCATGCGCGCGCCCAGGCTCAGGTTCAGGCGTTCGGTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCTTGAAGGTGGTATGGACCTCGCCTTCCTCGATTTCGCTGTGTTCGTAGTCGGTGTAACCAGCATCTACCTTGACCGAGC  >  NC_002947/1649895‑1650191                                                                                                                                                     |                                                                                                                                                     acacagcgaaatcgaggaaggcgaggtccataccaccttcaagaacaagggctacgaagcccgcatcgaagcccgtcaccagccgctcgggccgattgaaggggtgatcggtGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCa                                                                                                                                                      >  5:236136‑M1/113‑149 (MQ=255)  cacagcgaaatcgaggaaggcgaggtccataccaccttcaagaacaagggctacgaagcccgcatcgaagcccgtcaccagccgctcgggccgattgaaggggtgatcggtGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCAc                                                                                                                                                     >  3:96396‑M1/112‑149 (MQ=255)        cATGCGCGCGCCCAGGCTCAGGTTCAGGCGTTCGGTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATc                                                                                                                                                <  2:343552/148‑1 (MQ=255)          tGCGCGCGCCCAGGCTCAGGTTCAGGCGTTCGGTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCAcc                                                                                                                                             <  5:257016/149‑1 (MQ=255)               aggaaggcgaggtccataccaccttcaagaacaagggctacgaagcccgcatcgaagcccgtcaccagccgctcgggccgattgaaggggttatcggtGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGCCACCGATCACCCCTTc                                                                                                                                        >  7:283121‑M1/99‑149 (MQ=255)                   ccAGGCTCAGGTTCAGGCGTTCGGTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATc                                                                                                                                    <  6:337723/149‑1 (MQ=255)                   ccAGGCTCAGGTTCAGGCGTTCGGTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATc                                                                                                                                    >  2:354957/1‑149 (MQ=255)                           aGGTTCAGGCGTTCGGTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAg                                                                                                                            <  4:50980/149‑1 (MQ=255)                                      ttCGGTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGAc                                                                                                                 <  7:124209/149‑1 (MQ=255)                                         ggTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACggg                                                                                                              <  1:354957/149‑1 (MQ=255)                                          gTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGc                                                                                                             <  6:68009/149‑1 (MQ=255)                                              cTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCg                                                                                                         <  6:93857/149‑1 (MQ=255)                                                 gCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGAt                                                                                                                                                 <  7:71225/106‑1 (MQ=255)                                                 gCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGAt                                                                                                                                                 >  8:71225/1‑106 (MQ=255)                                                    aCTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTg                                                                                                                      <  2:123660/130‑1 (MQ=255)                                                    aCTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTg                                                                                                                      >  1:123660/1‑130 (MQ=255)                                                    aCTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCgg                                                                                                   >  2:21291/1‑149 (MQ=255)                                                    aCTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCgg                                                                                                   >  1:283228/1‑149 (MQ=255)                                                        cTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCtt                                                                                               >  1:242455/1‑149 (MQ=255)                                                               aTGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGcc                                                                                        >  4:90689/1‑149 (MQ=255)                                                                   aCAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTg                                                                                    >  3:130664/1‑149 (MQ=255)                                                                   aCAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCGGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTg                                                                                    >  6:219829/1‑149 (MQ=255)                                                                     aGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGt                                                                                   >  8:126737/1‑148 (MQ=255)                                                                     aGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGt                                                                                   <  7:126737/148‑1 (MQ=255)                                                                     aGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGAAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGtt                                                                                  >  1:94238/1‑149 (MQ=255)                                                                        gcCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTg                                                                                                                      <  4:37954/110‑1 (MQ=255)                                                                        gcCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTg                                                                                                                      >  3:37954/1‑110 (MQ=255)                                                                              cTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCTTGAAggt                                                                         <  3:289453/149‑1 (MQ=255)                                                                                   ggTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCTTGAAGGTGGTAt                                                                    >  1:265807/1‑149 (MQ=255)                                                                                             tgCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGGGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCTTGAAGGTGGTATGGACCTCGcc                                                          <  7:87486/149‑1 (MQ=255)                                                                                                  gaaggggtgatcggtggccaggtcagccgcaacgaattctccgccctgggcACCGATAACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCTTGAAGGTGGTATGGACCTCGCCTTCCt                                                     >  7:283121‑M2/52‑149 (MQ=255)                                                                                                   aCGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCtt                                                                               >  5:57617/1‑122 (MQ=255)                                                                                                   aCGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCtt                                                                               <  6:57617/122‑1 (MQ=255)                                                                                                      aaGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCTTGAAGGTGGTATGGACCTCGCCTTCCTCGAt                                                 >  8:87934/1‑149 (MQ=255)                                                                                                      aaGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCTTGAAGGTGGTATGGACCTCGCCTTCCTCGAt                                                 >  4:277531/1‑149 (MQ=255)                                                                                                          cTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCTTGAAGGTGGTATGGACCTCGCCTTCCTCGATTTCg                                             <  2:242455/149‑1 (MQ=255)                                                                                                               gtgcccaggtcagccgcaacgaattctccgccctgggcACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCTTGAAGGTGGTATGGACCTCGCCTTCCTCGATTTCGCtgtg                                        >  3:96396‑M2/39‑149 (MQ=255)                                                                                                                tgcccaggtcagccgcaacgaattctccgccctgggcACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCTTGAAGGTGGTATGGACCTCGCCTTCCTCGATTTCGCTgtgt                                       >  5:236136‑M2/38‑149 (MQ=255)                                                                                                                 GCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCTTg                                                                              <  4:126538‑M1/109‑1 (MQ=255)                                                                                                                  CCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCTTGAAGGTGGTATGGACCTCGCCTTCCTCGATTTCGCTGTGTTc                                     >  7:87934‑M1/1‑149 (MQ=255)                                                                                                                   CCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCTTGAAGGTGGTATGGACCTCGCCTTCCTCGATTTCGCTGTGTTCg                                    >  2:265807‑M1/1‑149 (MQ=255)                                                                                                                           gagaAGTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGATGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCTTGAAGGTGGTATGGACCTCGCCTTCCTCGATTTCGCTGTGTTCGTAGTCGgt                            <  4:64742/149‑1 (MQ=255)                                                                                                                              aaTTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCTTGAAGGTGGTATGGACCTCGCCTTCCTCGATTTCGCTGTGTTCGTAGTCGGTGTa                         <  2:283228/149‑1 (MQ=255)                                                                                                                                   gTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCTTGAAGGTGGTATGGACCTCGCCTTCCTCGATTTCGCTGTGTTCGTAGTCGGTGTAACCAg                    <  3:90689/149‑1 (MQ=255)                                                                                                                                                   gcACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCTTGAAGGTGGTATGGACCTCGCCTTCCTCGATTTCGCTGTGTTCGTAGTCGGTGTAACCAGCATCTACCTTGACCGa    <  6:236136‑M2/147‑1 (MQ=255)                                                                                                                                                     aCCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCTTGAAGGTGGTATGGACCTCGCCTTCCTCGATTTCGCTGTGTTCGTAGTCGGTGTAACCAGCATCTACCTTGACCGAGc  >  1:63247/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TGTGCTCCATGCGCGCGCCCAGGCTCAGGTTCAGGCGTTCGGTGGCTTGCCACTGCTCCAGCATGAACAGCGCCAGGCTGTCGGTATCGGTGTGCGGGACGAAGGCTTCCTCGCCCAGGGCGGAGAATTCGTTGCGGCTGACCTGGGCACCGATCACCCCTTCAATCGGCCCGAGCGGCTGGTGACGGGCTTCGATGCGGGCTTCGTAGCCCTTGTTCTTGAAGGTGGTATGGACCTCGCCTTCCTCGATTTCGCTGTGTTCGTAGTCGGTGTAACCAGCATCTACCTTGACCGAGC  >  NC_002947/1649895‑1650191

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.