New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1899218 =	41 (0.740)	6 (0.120)	5/226	NT	16.2%	intergenic (+288/‑232)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	1899278 =	26 (0.530)					intergenic (+348/‑172)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase

CCTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTT  >  NC_002947/1899076‑1899364                                                                                                                                                |                                                                                                                                                   gcgccggctgccccggcatgctgatgcaagcggggcaacacggcgcctttgtcgtgaagtggtgagggctgtcgacgttgacagcccgggatgaggtagatcagcaatttatgggccagctataccggccctttcgcgggcatGCCCGc                                                                                                                                               <  5:248483‑M1/6‑1 (MQ=255)  cTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGGCGCACGccccac                                                                                                                                              >  3:13495/1‑146 (MQ=255)   tCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCTcc                                                                                                                                            >  7:144768/1‑149 (MQ=255)         ccGTCCTCGATCACCGGCATCTCCTGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAgg                                                                                                                                      <  6:52030/149‑1 (MQ=255)          cGTCCTCGATCACCGGCATCTCCTGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGt                                                                                                                                     <  6:67091/149‑1 (MQ=255)           ccccggcatgctgatgcaagcggtgcaacacggcgcctttgtcgtgaagtggtgagggctgtcgacgttgacagcccgggatgaggtagatcagcaatttatgggccagctataccggccctttcgcgggcatGCCCGCTCCCACAgg                                                                                                                                      >  5:19643‑M1/134‑148 (MQ=255)               tCGATCACCGGCATCTCCTGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTACTgc                                                                                                                                >  7:2250/1‑149 (MQ=255)                  aTCACCGGCATCTCCTGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTACTGcgcc                                                                                                                             >  4:71349/1‑149 (MQ=255)                              tcCTGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCt                                                                                                                                              >  8:99988/1‑120 (MQ=255)                              tcCTGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCt                                                                                                                                              <  7:99988/120‑1 (MQ=255)                              tcCTGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCt                                                                                                                 >  5:64152/1‑149 (MQ=255)                              tcCTGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCt                                                                                                                 >  8:143297/1‑149 (MQ=255)                                ggggcaacacggcgcctttgtcgtgaagtggtgagggctgtcgacgttgacagcccgggatgaggtagatcagcaatttatgggccagctataccggccctttcgcgggcacGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCtt                                                                                                                >  2:157365‑M1/113‑149 (MQ=255)                                 tGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCGTGCCCGcga                                                                                                                                             >  2:122588/1‑116 (MQ=255)                                   ggACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGc                                                                                                              <  4:46212/147‑1 (MQ=255)                                         gggAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTCGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCACCCACAGGTACTGCGCCGCCCTCAGGCCATGCGATATcac                                                                                                      >  2:289291/1‑147 (MQ=255)                                            aGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCtgt                                                                                                   <  7:289245/149‑1 (MQ=255)                                              ggCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCtgtg                                                                                                  <  1:289291/148‑1 (MQ=255)                                              ggCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTgg                                                                                                 <  2:70671/149‑1 (MQ=255)                                              ggCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTgg                                                                                                 <  8:144768/149‑1 (MQ=255)                                              ggCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTgg                                                                                                 <  7:143297/149‑1 (MQ=255)                                               ctttgtcgtgaagtggtgagggctgtcgacgttgacagcccgggatgaggtagatcagcaatttatgggccagctataccggccctttcgcgggcatGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTgg                                                                                                 >  4:161696‑M1/98‑149 (MQ=255)                                                cAGTGCTCATGCTGGAAATTGACCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGa                                                                                               <  8:182211/149‑1 (MQ=255)                                                     cTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCgg                                                                                           <  3:71349/148‑1 (MQ=255)                                                        aTGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGc                                                                                                                                               >  7:187498/1‑93 (MQ=255)                                                        aTGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGc                                                                                                                                               <  8:187498/93‑1 (MQ=255)                                                            tGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGccc                                                                                   >  5:309911/1‑149 (MQ=255)                                                              gAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTACTGCGCCGCCCCCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGccc                                                                                   <  1:285000/147‑1 (MQ=255)                                                                     ccccAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAggg                                                                          >  6:261167/1‑149 (MQ=255)                                                                      cccAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCCCGACCCCCGGTACTGGGCCGCCCTCCGGGCGTGGGGTAACCCGGTGGGAGCGGGGATGCCCGCGAAAGGGc                                                                         >  2:106734/1‑149 (MQ=255)                                                                      cccAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCATCGCGG‑GCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCa                                                                                                                      <  8:115222/104‑1 (MQ=255)                                                                       ccAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGcc                                                                        >  8:173326/1‑149 (MQ=255)                                                                       ccAGCAAAGCGACTGGGAGCATGAGGTTGCCAACGCATGGTGCGTAACCTGTGAAGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTACTGCTCCCCACACCGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCTAAACGGcc                                                                        >  4:44372/1‑149 (MQ=37)                                                                        cAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCTCCCATAGGTACTGCGCCGCCCTCAGGCCTTGCGATAACCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCg                                                                       <  1:106734/149‑1 (MQ=255)                                                                         aGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTg                                                                                                               <  2:278910/108‑1 (MQ=255)                                                                         aGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTg                                                                                                               >  1:278910/1‑108 (MQ=255)                                                                          gacgttgacagcccgggatgaggtagatcagcaatttatgggccagctataccggccctttcgcgggcatGCCCGCTCCCACAGGTACTGCGCCGCCCTc                                                                                                                       >  8:218033‑M1/71‑100 (MQ=255)                                                                          gacgttgacagcccgggatgaggtagatcagcaatttatgggccagctataccggccctttcgcgggcatGCCCGCTCCCACAGGTACTGCGCCGCCCTc                                                                                                                       <  7:218033‑M1/30‑1 (MQ=255)                                                                                   cTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGc                                                            >  5:83997/1‑149 (MQ=255)                                                                                           aTGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCGGCTCCCACAGGTACTGCGCCGCCCTCAGGCGTTGCGATTTCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAAt                                                    <  6:64152/149‑1 (MQ=255)                                                                                                    ccACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCTCCCACACGGAATTCGCCGCCCTCAGGCCGTGGGATATACCGGTGGGAGCGGGCATGCCCCCGAAAAGGCCGGTATAAGAGGCCCAAAAAATgaggaag                                            >  2:187090/1‑142 (MQ=25)                                                                                                     tcagcaatttatgggccagctataccggccctttcgcgggcatGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCtt                                                                                                                <  7:336265‑M1/37‑1 (MQ=255)                                                                                                     tcagcaatttatgggccagctataccggccctttcgcgggcatGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCtt                                                                                                                >  8:336265‑M1/44‑80 (MQ=255)                                                                                                                    aaCCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTTCCATATCCCTGTGGGAGCGGGCATGACCGCGAAAGGGCCCGTATAGCTGGCCCATAAATTGCTGATCAAACTCATCCCGGGCTg                           >  4:105957/1‑149 (MQ=38)                                                                                                                              ggCCTGTTCGCTG‑GCACGCCCGATCCCTCAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGa                 <  3:105957/149‑1 (MQ=255)                                                                                                                                    ttCGCGG‑GCACGCCCGCACCCACAGGTACTGCGCCGCCCTCAGGCCTTGGGATATACCAGTGGGAGCGGGGAAGGCCGCGAAAGGGCCGGGTTAGCGGGGCCAAAAATTTCTGATGTACCAGATCCCCGGCGGTCAACGTCCACAGccc           >  6:42625/1‑149 (MQ=255)                                                                                                                                      cgcgG‑GCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGccc           <  1:187090/147‑1 (MQ=255)                                                                                                                                      cgcgG‑GCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGcc            <  5:347328/146‑1 (MQ=255)                                                                                                                                      cgcgG‑GCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGcc            <  8:2250/146‑1 (MQ=255)                                                                                                                                       gcgG‑GCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTca        <  7:173326/149‑1 (MQ=255)                                                                                                                                              aCGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACtt  >  5:337905/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                   CCTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTT  >  NC_002947/1899076‑1899364

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.