New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1899218 =	41 (0.740)	6 (0.120)	5/226	NT	16.2%	intergenic (+288/‑232)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	1899278 =	26 (0.530)					intergenic (+348/‑172)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase

TGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGC  >  NC_002947/1899135‑1899420                                                                                                                                                |                                                                                                                                               tGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGccc                                                                                                                                           >  5:309911/1‑149 (MQ=255)   gAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCCCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGccc                                                                                                                                           <  1:285000/147‑1 (MQ=255)          ccccAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAggg                                                                                                                                  >  6:261167/1‑149 (MQ=255)           cccAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGGGCACGCCCCCGACCCCCGGTACTGGGCCGCCCTCCGGGCGTGGGGTAACCCGGTGGGAGCGGGGATGCCCGCGAAAGGGc                                                                                                                                 >  2:106734/1‑149 (MQ=255)            ccAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGcc                                                                                                                                >  8:173326/1‑149 (MQ=255)            ccAGCAAAGCGACTGGGAGCATGAGGTTGCCAACGCATGGTGCGTAACCTGTGAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCTCCCCACACCGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCTAAACGGcc                                                                                                                                >  4:44372/1‑149 (MQ=37)             cAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCATAGGTACTGCGCCGCCCTCAGGCCTTGCGATAACCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCg                                                                                                                               <  1:106734/149‑1 (MQ=255)                        cTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGc                                                                                                                    >  5:83997/1‑149 (MQ=255)                                aTGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGGGCACGCCGGCTCCCACAGGTACTGCGCCGCCCTCAGGCGTTGCGATTTCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAAt                                                                                                            <  6:64152/149‑1 (MQ=255)                                         ccACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACACGGAATTCGCCGCCCTCAGGCCGTGGGATATACCGGTGGGAGCGGGCATGCCCCCGAAAAGGCCGGTATAAGAGGCCCAAAAAATgaggaag                                                                                                    >  2:187090/1‑142 (MQ=25)                                                         aaCCTGTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTTCCATATCCCTGTGGGAGCGGGCATGACCGCGAAAGGGCCCGTATAGCTGGCCCATAAATTGCTGATCAAACTCATCCCGGGCTg                                                                                   >  4:105957/1‑149 (MQ=38)                                                                   ggCCTGTTCGCTGGCACGCCCGATCCCTCAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGa                                                                         <  3:105957/149‑1 (MQ=255)                                                                         ttCGCGGGCACGCCCGCACCCACAGGTACTGCGCCGCCCTCAGGCCTTGGGATATACCAGTGGGAGCGGGGAAGGCCGCGAAAGGGCCGGGTTAGCGGGGCCAAAAATTTCTGATGTACCAGATCCCCGGCGGTCAACGTCCACAGccc                                                                   >  6:42625/1‑149 (MQ=255)                                                                           cgcgGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGccc                                                                   <  1:187090/147‑1 (MQ=255)                                                                           cgcgGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGcc                                                                    <  8:2250/146‑1 (MQ=255)                                                                           cgcgGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGcc                                                                    <  5:347328/146‑1 (MQ=255)                                                                            gcgGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTca                                                                <  7:173326/149‑1 (MQ=255)                                                                                  aCGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACtt                                                          >  5:337905/1‑149 (MQ=255)                                                                                     CCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCAc                                                       >  5:42625‑M1/1‑149 (MQ=255)                                                                                        GCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAg                                                                      <  8:113392‑M1/131‑1 (MQ=255)                                                                                        GCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAg                                                                      >  7:113392‑M1/1‑131 (MQ=255)                                                                                            ccacagggatatcgcaaggcctgagggcggcgcagtacctgtgggagcgggcATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAg                                                >  4:161696‑M2/53‑149 (MQ=255)                                                                                            CCACTGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAg                                                >  3:44372‑M1/1‑149 (MQ=255)                                                                                            CCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAg                                                <  2:111713‑M1/149‑1 (MQ=255)                                                                                                     cTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCgtgt                                       >  1:146555/1‑149 (MQ=255)                                                                                                         gccgccCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGcc                                   >  4:23630/1‑149 (MQ=255)                                                                                                           aaggcctgagggcggcgcagtacctgtgggagcgggcGTGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGcccc                                 >  2:157365‑M2/38‑149 (MQ=255)                                                                                                           aaggcctgagggcggcgcagtacctgtgggagcgggcATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGa                                                                                                      <  7:336265‑M2/43‑1 (MQ=255)                                                                                                           aaggcctgagggcggcgcagtacctgtgggagcgggcATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGa                                                                                                      >  8:336265‑M2/38‑80 (MQ=255)                                                                                                            gccCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAgg                                               >  4:150197/1‑134 (MQ=255)                                                                                                            gccCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAgg                                               <  3:150197/134‑1 (MQ=255)                                                                                                                  gagggcggcgcagtacctgtgggagcgggcATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTc                                                                           <  7:218033‑M2/70‑1 (MQ=255)                                                                                                                  gagggcggcgcagtacctgtgggagcgggcATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTc                                                                           >  8:218033‑M2/31‑100 (MQ=255)                                                                                                                  aGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGc                           <  6:337905/148‑1 (MQ=255)                                                                                                                  aGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGc                           <  6:83997/148‑1 (MQ=255)                                                                                                                  aGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCa                          <  6:309911/149‑1 (MQ=255)                                                                                                                     ccTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCa                       <  2:146555/149‑1 (MQ=255)                                                                                                                                 cctgtgggagcgggcATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCACCGCTTGCATCAGCATGCCgggg            >  5:19643‑M2/16‑148 (MQ=255)                                                                                                                                          gcgggcATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGgcgc  <  5:248483‑M2/143‑1 (MQ=255)                                                                                                                                                |                                                                                                                                               TGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGC  >  NC_002947/1899135‑1899420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.