New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2737686 =	45 (0.810)	3 (0.060)	3/246	NT	7.6%	coding (65/4494 nt)	PP_2395	leucine‑rich repeat‑containing protein
	?	NC_002947	2737723 =	30 (0.560)					coding (102/4494 nt)	PP_2395	leucine‑rich repeat‑containing protein

CTGAGCGCAGGCATTAGCTATATAGCGCCTGGCGGGGAGCAGGCAACTTAGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGAACACGGTGCTGCGAGGTATC  >  NC_002947/2737540‑2737804                                                                                                                                                   |                                                                                                                        caagcccataacgctcgtcgagggcctttcccagggctgatgcgacgaaactgtcgatgccctcgatacctcgcagcaccgtgttcacttgctcacagcagcgaaggctgtttgacaatgccctgccgatctcaggcagttgctcagca                                                                                                                       >  7:206336‑M1/147‑149 (MQ=255) caagcccataacgctcgtcgagggcctttcccagggctgatgcgacgaaactgtcgatgccctcgatacctcgcagcaccgtgttcacttgctcacagcagcgaaggctgtttgacaatgccctgcagatgtaaggcagttgctcagca                                                                                                                       <  8:223663‑M1/3‑1 (MQ=255)  tGAGCGCAGGCATTAGCTATATAGCGCCTGGCGGGGAGCAGGCAACTTAGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAg                                                                                                                      >  5:269520/1‑149 (MQ=255)      cgcAGGCATTAGCTATATAGCGCCTGGCGGGGAGCAGGCAACTTAGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGgcgc                                                                                                                  <  6:304073/149‑1 (MQ=255)        cAGGCATTAGCTATATAGCGCCTGGCGGGGAGCAGGCAACTTAGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCt                                                                                                                <  7:205974/149‑1 (MQ=255)         aGGCATTAGCTATATAGCGCCTGGCGGGGAGCAGGCAACTTAGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCCTCGGCAGGCGCCTg                                                                                                               >  5:264686/1‑149 (MQ=255)           gCATTAGCTATATAGCGCCTGGCGGGGAGCAGGCAACTTAGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGcc                                                                                                             >  6:30613/1‑149 (MQ=255)           gCATTAGCTATATAGCGCCTGGCGGGGAGCAGGCAACTTAGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGc                                                                                                              >  3:156421/1‑148 (MQ=255)                    atataGCGCCTGGCGGGGAGCAGGCAACTTAGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGtt                                                                                                    >  3:277835/1‑149 (MQ=255)                       taGCGCCTGGCGGGGAGCAGGCAACTTAGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGc                                                                                                  <  8:113593/148‑1 (MQ=255)                           gcCTGGCGGGGAGCAGGCAACTTAGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCAt                                                                                             >  6:180881/1‑149 (MQ=255)                             cTGGCGGGGAGCAGGCAACTTAGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGc                                                                                                  >  4:350591/1‑142 (MQ=255)                             cTGGCGGGGAGCAGGCAACTTAGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGc                                                                                                  <  3:350591/142‑1 (MQ=255)                                  ggggAGCAGGCAACTTAGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACctg                                                                                      >  7:340225/1‑149 (MQ=255)                                   ggctgatgcgacgaaactgtcgatgccctcgatacctcgcagcaccgtgttcacttgctcacagcagcgaaggctgtttgacaatgccctgccgatctcaggcagttgctcaGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACctgc                                                                                     >  8:205206‑M1/113‑149 (MQ=255)                                      aGCAGGCAACTTAGTCTTGCCTCTTTTCATGAAGAGGCCCCCGCTTTGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGa                                                                                  <  2:90428/149‑1 (MQ=255)                                         aGGCAACTTAGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGc                                                                                >  4:333559/1‑148 (MQ=255)                                          ggCAACTTAGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCTTCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGc                                                                                <  1:79424/147‑1 (MQ=255)                                          ggCAACTTAGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGc                                                                                >  2:79424/1‑147 (MQ=255)                                              aCTTAGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGc                                                                          >  3:13367/1‑149 (MQ=255)                                                ttAGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGc                                                                                                  <  1:135876/123‑1 (MQ=255)                                                ttAGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGc                                                                                                  >  2:135876/1‑123 (MQ=255)                                                 tAGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCt                                                                        >  6:365149/1‑148 (MQ=255)                                                  aGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCt                                                                        >  5:201836/1‑147 (MQ=255)                                                        gCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGAt                                                                   <  5:180881/146‑1 (MQ=255)                                                        gCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCgg                                                                <  4:156421/149‑1 (MQ=255)                                                          ctctTTTCATGAAGTGGCCCCCGCTATGGACACCAGTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCt                                                                        <  3:95535/139‑1 (MQ=255)                                                          ctctTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGtt                                                                                                    <  1:246790/111‑1 (MQ=255)                                                          ctctTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGtt                                                                                                    >  2:246790/1‑111 (MQ=255)                                                               ttCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑gg                                                           <  8:340225/146‑1 (MQ=255)                                                                  aTGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTg                                                     <  5:30613/149‑1 (MQ=255)                                                                     aaGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCa                                                  <  6:269520/149‑1 (MQ=255)                                                                      ctcgcagcaccgtgttcacttgctcacagcagcgaaggctgtttgacaatgccctgccgatctcaggcagttgctcaGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACctg                                                                                      >  8:304504‑M1/78‑113 (MQ=255)                                                                      ctcgcagcaccgtggtcacttgctcacagcagcgaaggctgtttgacaatgccctgccgatctcaggcagttgctcaGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACctg                                                                                      <  7:304504‑M1/36‑1 (MQ=255)                                                                        agGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAAc                                               <  4:277835/149‑1 (MQ=255)                                                                            ccccGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGcc                                           >  7:272995/1‑149 (MQ=255)                                                                               cGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTc                                        <  5:365149/149‑1 (MQ=255)                                                                                  tATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCgct                                     >  2:273427/1‑149 (MQ=255)                                                                                           cacTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAg                             >  2:106727/1‑148 (MQ=255)                                                                                              tttGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTAAACGACGGCATCATCGGCAGGCGCCTGCAACCCTGGTTGCGTCATGAACCTGATGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAAACGCCTTCGCTGAGGTGAGCAAg                         >  8:263599/1‑149 (MQ=255)                                                                                                 gCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTg                       <  6:201836/148‑1 (MQ=255)                                                                                                   cGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGaa                     >  4:61629/1‑148 (MQ=255)                                                                                                               aGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGAACACGGTGCTGCGa        <  3:333559/149‑1 (MQ=255)                                                                                                               aGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGAACACGGTGCTGCGa        <  8:272995/149‑1 (MQ=255)                                                                                                                ggCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGAACACGGTGCTGCGAg       <  1:106727/149‑1 (MQ=255)                                                                                                                 gccgccATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCACGGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGAACACGGTGCTGCGAg       <  1:273427/149‑1 (MQ=255)                                                                                                                       aTCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGAACACGGTGCTGCGAGGTATc  >  3:195937/1‑147 (MQ=255)                                                                                                                           aTGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCtt                                         <  2:149750/104‑1 (MQ=255)                                                                                                                           aTGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCtt                                         >  1:149750/1‑104 (MQ=255)                                                                                                                           aTGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGt                        >  5:104513/1‑121 (MQ=255)                                                                                                                           aTGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGt                        <  6:104513/121‑1 (MQ=255)                                                                                                                                                   |                                                                                                                        CTGAGCGCAGGCATTAGCTATATAGCGCCTGGCGGGGAGCAGGCAACTTAGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGAACACGGTGCTGCGAGGTATC  >  NC_002947/2737540‑2737804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.