New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2737686 =	45 (0.810)	3 (0.060)	3/246	NT	7.6%	coding (65/4494 nt)	PP_2395	leucine‑rich repeat‑containing protein
	?	NC_002947	2737723 =	30 (0.560)					coding (102/4494 nt)	PP_2395	leucine‑rich repeat‑containing protein

AGCAGGCAACTTAGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGAACACGGTGCTGCGAGGTATCGAGGGCATCGACAGTTTCGTCGCATCAGCCCTGGGAAAGGCCCTCGACGAGCGTTATGGGCTTG  >  NC_002947/2737577‑2737868                                                                                                                                                   |                                                                                                                                                   aGCAGGCAACTTAGTCTTGCCTCTTTTCATGAAGAGGCCCCCGCTTTGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGa                                                                                                                                                  <  2:90428/149‑1 (MQ=255)    aGGCAACTTAGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGc                                                                                                                                                >  4:333559/1‑148 (MQ=255)     ggCAACTTAGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCTTCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGc                                                                                                                                                <  1:79424/147‑1 (MQ=255)     ggCAACTTAGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGc                                                                                                                                                >  2:79424/1‑147 (MQ=255)         aCTTAGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGc                                                                                                                                          >  3:13367/1‑149 (MQ=255)            tAGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCt                                                                                                                                        >  6:365149/1‑148 (MQ=255)             aGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCt                                                                                                                                        >  5:201836/1‑147 (MQ=255)                   gCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGAt                                                                                                                                   <  5:180881/146‑1 (MQ=255)                   gCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCgg                                                                                                                                <  4:156421/149‑1 (MQ=255)                     ctctTTTCATGAAGTGGCCCCCGCTATGGACACCAGTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCt                                                                                                                                        <  3:95535/139‑1 (MQ=255)                          ttCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑gg                                                                                                                           <  8:340225/146‑1 (MQ=255)                             aTGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTg                                                                                                                     <  5:30613/149‑1 (MQ=255)                                aaGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCa                                                                                                                  <  6:269520/149‑1 (MQ=255)                                   agGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAAc                                                                                                               <  4:277835/149‑1 (MQ=255)                                       ccccGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGcc                                                                                                           >  7:272995/1‑149 (MQ=255)                                          cGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTc                                                                                                        <  5:365149/149‑1 (MQ=255)                                             tATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCgct                                                                                                     >  2:273427/1‑149 (MQ=255)                                                      cacTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAg                                                                                             >  2:106727/1‑148 (MQ=255)                                                         tttGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTAAACGACGGCATCATCGGCAGGCGCCTGCAACCCTGGTTGCGTCATGAACCTGATGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAAACGCCTTCGCTGAGGTGAGCAAg                                                                                         >  8:263599/1‑149 (MQ=255)                                                            gCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTg                                                                                       <  6:201836/148‑1 (MQ=255)                                                              cGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGaa                                                                                     >  4:61629/1‑148 (MQ=255)                                                                          aGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGAACACGGTGCTGCGa                                                                        <  3:333559/149‑1 (MQ=255)                                                                          aGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGAACACGGTGCTGCGa                                                                        <  8:272995/149‑1 (MQ=255)                                                                           ggCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGAACACGGTGCTGCGAg                                                                       <  1:106727/149‑1 (MQ=255)                                                                            gccgccATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCACGGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGAACACGGTGCTGCGAg                                                                       <  1:273427/149‑1 (MQ=255)                                                                                  aTCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGAACACGGTGCTGCGAGGTATc                                                                  >  3:195937/1‑147 (MQ=255)                                                                                      aTGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCtt                                                                                                         <  2:149750/104‑1 (MQ=255)                                                                                      aTGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCtt                                                                                                         >  1:149750/1‑104 (MQ=255)                                                                                      aTGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGt                                                                                        <  6:104513/121‑1 (MQ=255)                                                                                      aTGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGt                                                                                        >  5:104513/1‑121 (MQ=255)                                                                                                              gcaggtgcatgacgcaaccagggtggcaggcgcctgcTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGAACACGGTGCTGCGAGGTATCGAGGGCATCGACAGTTTCGTCGCATCAGcc                                    >  8:205206‑M2/38‑149 (MQ=255)                                                                                                               caggtgcatgacgcaaccagggtggcaggcgcctgcTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGACCACGGTGCTGCGAg                                                                       <  7:304504‑M2/77‑1 (MQ=255)                                                                                                               caggtgcatgacgcaaccagggtggcaggcgcctgcTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGAACACGGTGCTGCGAg                                                                       >  8:304504‑M2/37‑113 (MQ=255)                                                                                                                AGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGAACACGGTGCTGCGAGGTATCGAGGGCATCGACAGTTTCGTCGCATCAGCCCt                                  <  1:133214‑M1/149‑1 (MQ=255)                                                                                                                  GCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGAACACGGTGCTGCGAGGTATCGAGGGCATCg                                                        >  7:339575‑M1/1‑125 (MQ=255)                                                                                                                  GCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGAACACGGTGCTGCGAGGTATCGAGGGCATCg                                                        <  8:339575‑M1/125‑1 (MQ=255)                                                                                                                  GCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGAACACGGTGCTGCGAGGTATCGAGGGCATCGACAGTTTCGTCGCATCAGCCCTgg                                >  6:264686‑M1/1‑149 (MQ=255)                                                                                                                          cACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGAACACGGTGCTGCGAGGTATCGAGGGCATCGACAGTTTCGTCGCATCAGCCCTGGGAAAGGcc                        >  7:276115/1‑149 (MQ=255)                                                                                                                           aCCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGt                                                                                        <  8:325889/84‑1 (MQ=255)                                                                                                                                 gTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGAACACGGTGCTGCGAGGTATCGAGGGCATCGACAGTTTCGTCGCATCAGCCCTGGGAAAGGCCCTcgac                  <  3:61629/148‑1 (MQ=255)                                                                                                                                      gTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGACCACGGTGCTGCGAGGTATCGAGGGCATCGACAGTTTCGTCGCATCAGCCCTGGGACAGGCACTCGACGAGCgg            >  8:278947/1‑148 (MQ=255)                                                                                                                                         aTGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGAACACGGTGCTGCGAGGTATCGAGGGCATCGACAGTTTCGTCGCATCAGCCCTGGGAAAGGCCCTCGACGAGCGTTAt         >  5:284747/1‑149 (MQ=255)                                                                                                                                          tGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGAACACGGTGCTGCGAGGTATCGAGGGCATCGACAGTTTCGTCGCATCAGCCCTGGGAAAGGCCCTCGACGAGCGTTATg        <  4:195937/149‑1 (MQ=255)                                                                                                                                           gCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGAACACGGTGCTGCGAGGTATCGAGGGCATCGACAGTTTCGTCGCATCAGCCCTGGGAAAGGCCCTCGACGAGCGTTATgg       >  7:223663/1‑149 (MQ=255)                                                                                                                                                tgcTGAGCAACTGCCTTACATCTGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGAACACGGTGCTGCGAGGTATCGAGGGCATCGACAGTTTCGTCGCATCAGCCCTGGGAAAGGCCCTCGACGAGCGTTATGGGCTTg  <  8:223663‑M2/146‑1 (MQ=255)                                                                                                                                                tgcTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGAACACGGTGCTGCGAGGTATCGAGGGCATCGACAGTTTCGTCGCATCAGCCCTGGGAAAGGCCCTCGACGAGCGTTATGGGCTTg  >  7:206336‑M2/4‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                   AGCAGGCAACTTAGTCTGGCCTCTTTTCATGAAGAGGCCCCCGCTATGGACACCACTTTGCCGTCAGATGCGCAGGCCGCCATCGATGCTTTCCAGGACGGCATCATCGGCAGGCGCCTGCCACCCTGGTTGCGTCATGCACCTGCTGAGCAACTGCCTGAGATCGGCA‑GGGCATTGTCAAACAGCCTTCGCTGCTGTGAGCAAGTGAACACGGTGCTGCGAGGTATCGAGGGCATCGACAGTTTCGTCGCATCAGCCCTGGGAAAGGCCCTCGACGAGCGTTATGGGCTTG  >  NC_002947/2737577‑2737868

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.