New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3610726 =	48 (0.870)	4 (0.080)	4/238	NT	8.1%	coding (2958/3396 nt)	mcoA	Mn(II) copper oxidase A
	?	NC_002947	3610778 =	46 (0.890)					coding (2906/3396 nt)	mcoA	Mn(II) copper oxidase A

CGCCACTGCTGGGGTGACGGCGATGCTGACCGTGGCCGGGGTCACCGAGTCGGCCCCCTTGGTATCACGCGCC‑GTGTAATTGAAGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGTTGCCGTCCGGGTCGCTGTCGTTGGCCAGCACGTTCAGGGTGATCGGCTTGCCTGCAGTCGTTGCGGCACTGTCGTTGGCCACGACAGG  >  NC_002947/3610579‑3610872                                                                                                                                                     |                                                                                                                                                   caacgttccgcaccaaaaccgatgacgacgatgacgacccggccaacaaaccacctgtcgtggccaacgacagtgccgcaacgactgcaggcaagccgatcaccctgaacgtgctggccaacgacagcgacccggacggcaacgtaccg                                                                                                                                                    <  1:186135‑M1/1‑1 (MQ=255)   acgttccgcaccaaaaccgatgacgacgatgacgacccggccaacaaaccacctgtcgtggccaacgacagtgccgcaacgactgcaggcaagccgatcaccctgaacgtgctggccaacgacagcgacccggacggcaacgtaccGCt                                                                                                                                                  <  2:37021‑M1/3‑1 (MQ=255)      ctgctgGGGTGACGGCGATGCTGACCGTGGCCGGGGTCACCGAGTCGGCCCCCTTGGTATCACGCGCC‑GTGTAATTGAAGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACg                                                                                                                                              <  5:206452/149‑1 (MQ=255)         ctgGGGTGACGGCGATGCTGACCGTGGCCGGGGTCACCGAGTCGGCGCCCTTGGTATCACGCGCC‑GTGTAATTGAAGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTa                                                                                                                                           >  8:72801/1‑149 (MQ=255)          gcaccaaaaccgatgacgacgatgacgacccggccaacaaaccacctgtcgtggccaacgacagtgccgcaacgactgcaggcaagccgatcaccctgaacgtgctggccaacgacagcgacccggacggcaacgtaccGCTCACGGt                                                                                                                                            <  7:172646‑M1/9‑1 (MQ=255)               tGACGGCGATGCTGACCGTGGCCGGGGTCACCGAGTCGGCCCCCTTGGTATCACGCGCC‑GTGTAATTGAAGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTgg                                                                                                                                     >  8:50876/1‑149 (MQ=255)                   ggCGATGCTGACCGTGGCCGGGGTCACCGAGTCGGCCCCCTTGGTATCACGCGCC‑GTGTAATTGAAGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCg                                                                                                                                  >  6:103580/1‑148 (MQ=255)                      gATGCTGACCGTGGCCGGGGTCACCGAGTCGGCCCCCTTGGTATCACGCGCC‑GTGTAATTGAAGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGt                                                                                                                              >  1:133263/1‑149 (MQ=255)                      gATGCTGACCGTGGCCGGGGTCACCGAGTCGGCCCCCTTGGTATCACGCGCC‑GTGTAATTGAAGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGt                                                                                                                              >  5:150669/1‑149 (MQ=255)                        tGCTGACCGTGGCCGGGGTCACCGAGTCGGCGCCCTTGGTATCACGCGCC‑GTGTAATTGAAGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTcc                                                                                                                            <  7:72801/149‑1 (MQ=255)                            gACCGTGGCCGGGGTCACCGAGTCGGCCCCCTTGGTATCACGCGCCAGTGTAATTGAAGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCggc                                                                                                                         >  1:259078/1‑149 (MQ=255)                             aCCGTGGCCGGGGTCACCGAGTCGGCCCCCTTGGTATCACGCGCC‑GTGTAATTGAAGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGTGTGTACGTCACTGTGCTGCCGTCGCTGCTCACGGTACCCTGGCCGGAGTCCggct                                                                                                                        <  1:30125/148‑1 (MQ=255)                              ccGTGGCCGGGGTCACCGAGTCGGCCCCCTTGGTATCACGCGCC‑GTGTAATTGAAGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGCCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCggctgg                                                                                                                      <  6:150669/149‑1 (MQ=255)                               cGTGGCCGGGGTCACCGAGTCGGCCCCCTTGGTATCACGCGCC‑GTGTAATTGAAGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCATGGTACCCTGGCCGGAGTCCggctggc                                                                                                                     >  2:17830/1‑149 (MQ=255)                                 tGGCCGGGGTCACCGAGTCGGCCCCCTTGGTATCACGCGCC‑GTGTAATTGAAGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCggctggct                                                                                                                    >  1:179732/1‑148 (MQ=255)                                  ggCCGGGGTAACCGAGTCGGCCCCCTTGGTATCACGCGCC‑GTGTAATTGAAGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGa                                                                                                                  <  5:337216/149‑1 (MQ=255)                                       gggTCACCGAGTCGGCCCCCTTGGTATCACGCGCC‑GTGTAATTGAAGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCATGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCg                                                                                                             <  1:17830/149‑1 (MQ=255)                                        ggTCACCGAGTCGGCCCCCTTGGTATCACGCGCC‑GTGTAATTGAAGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCgg                                                                                                            <  7:256829/149‑1 (MQ=255)                                             ccGAGTCGGCCCCCTTGGTATCACGCGCC‑GTGTAATTGAAGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGGCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGccc                                                                                                       >  7:336006/1‑149 (MQ=255)                                             aacaaaccacctgtcgtggccaacgacagtgccgcaacgactgcaggcaagccgatcaccctgaacgtgctggccaacgacagcgacccggacggcaacgtaccGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGAc                                                                                                        <  6:123182‑M1/45‑1 (MQ=255)                                                aaaccacctgtcgtggccaacgacagtgccgcaacgactgcaggcaagccgatcaccctgaacgtgctggccaacgacagcgacccggacggcaacgtaccGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGt                                                                                                     >  5:123182‑M1/102‑149 (MQ=255)                                                    ggCCCCCTTGGTATCACGCGCC‑GTGTAATTGAAGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGc                                                                                                 <  2:133263/148‑1 (MQ=255)                                                       ccccTTGGTATCACGCGCC‑GTGTAATTGAAGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTa                                                                                             >  4:248628/1‑149 (MQ=255)                                                        cccTTGGAATCACGCGCC‑GTGTAATTGAAGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTAc                                                                                            >  7:290070/1‑149 (MQ=255)                                                           ttGGTAGCAGGCGCC‑GTGTAATTGCAGCTGGCAGTGATCGGCGTGGCGACCGTAGCGGGTGGGGTGTAAGTCAGTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGtt                                                                                         <  8:336006/149‑1 (MQ=255)                                                                aTCACGCGCC‑GTGTAATTGAAGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGTTGCCGt                                                                                    >  8:172646/1‑149 (MQ=255)                                                                       gcC‑GTGTAATTGAAGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGTTGCCGTCCGGGTc                                                                             <  2:179732/149‑1 (MQ=255)                                                                        cc‑GTGTAATTGAAGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGTTGCCGTCCGGGTCg                                                                            <  5:103580/149‑1 (MQ=255)                                                                            ccgcaacgactgcaggcaagccgatcaccctgaacgtgctggccaacgacagcgacccggacggcaacgtaccGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAg                                                                                                  <  5:287478‑M1/51‑1 (MQ=255)                                                                            ccgcaacgactgcaggcaagccgatcaccctgaacgtgctggccaacgacagcgacccggacggcaacgtaccGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAg                                                                                                  >  6:287478‑M1/74‑124 (MQ=255)                                                                              tAATTGAAGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGTTGCCGTCCGGGTCGCTGTc                                                                       >  1:55751/1‑149 (MQ=255)                                                                              tAATGGAAGCCGGCCGTGAACGGCGTGGCGACCGGAGCGGGGGGCCTGTACGGCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGGGAGCGGTACGTTGCCGTCCTGGTCGCTGTc                                                                       <  8:218849/149‑1 (MQ=255)                                                                                aTTGAAGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGTTGCCGTCCGGGTCGCTGTCg                                                                      <  2:259078/148‑1 (MQ=255)                                                                                 ttGAAGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGTTGCCGTCCGGGTCGCTGTCGtt                                                                    >  6:116200/1‑149 (MQ=255)                                                                                   gAAGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGTTGCCGTCCGGGTCGCTGTCGTTg                                                                   <  3:112438/148‑1 (MQ=255)                                                                                    aaGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGTTGCCGTCCg                                                                                 <  4:180481/133‑1 (MQ=255)                                                                                    aaGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGTTGCCGTCCg                                                                                 >  3:180481/1‑133 (MQ=255)                                                                                        tGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGTTGCCGTCCGGGTCGCTGTCGTTGGCCAg                                                              >  5:107732/1‑148 (MQ=255)                                                                                                 aCGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGTTGCCGTCCGGGTCGCTGTCGTTGGCCAGCACGTTCAg                                                     <  8:290070/148‑1 (MQ=255)                                                                                                  cGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGTTGCCGTCCGGGTCGCTGTCGTTGGCCAGCACGTTCAggg                                                   >  2:186135/1‑149 (MQ=255)                                                                                                     cGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGTTGCCGTCCGGGTCGCTGTCGTTGGCCAGCACGTTCAGGGTGa                                                >  5:370215/1‑149 (MQ=255)                                                                                                          cGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGTTGCCGTCCGGGTCGCTGTCGTTGGCCAGCACGTTCAGGGTGATCGGc                                           <  6:370215/149‑1 (MQ=255)                                                                                                           gACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGTTGCCGTCCGGGTCGCTGTCGTTGGCCAGCACGTTCAGGGTGATCGGCt                                          >  1:37021/1‑149 (MQ=255)                                                                                                                 aGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGTTGCCGTCCGGGTCGCTGTCGTTGGCCAGCACGTTCAGGGTGATCGGCTTGCCTg                                    >  3:111572/1‑149 (MQ=255)                                                                                                                     ggtggggtgTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGTTGCCGTCCGGGTCGCTGTCGTTGGCCAGc                                                             <  4:172818/120‑1 (MQ=255)                                                                                                                     ggtggggtgTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGTTGCCGTCCGGGTCGCTGTCGTTGGCCAGc                                                             >  3:172818/1‑120 (MQ=255)                                                                                                                           gtgtACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGTTGCCGTCCGGGTCGCTGTCGTTGGCCAGCACGTTCAGGGTGATCGGCTTGCCTGCAGTCGTTGc                          >  1:284377/1‑149 (MQ=255)                                                                                                                           gtgtACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGTTGCCGTCCGGGTCGCTGTCGTTGGCCAGCACGTTCAGGGTGATCGGCTTGCCTGCAGTCGTTGc                          >  2:103434/1‑149 (MQ=255)                                                                                                                              tACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGTTGCCGTCCGGGTCGCTGTCGTTGGCCAGCACGTTCAGGGTGATCGGCTTGCCTGCAGTCGTTGCgg                        >  8:329111/1‑148 (MQ=255)                                                                                                                                  tCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGTTGCCGTCCGGGTCGCTGTCGTTGGCCAGCACGTTCAGGGTGATCGGCTTGCCTGCAGTCGTTGCGGCACTg                   <  7:329111/149‑1 (MQ=255)                                                                                                                                    aCTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGTTGCCGTCCGGGTCGCTGTCGTTGGCCAGCACGTTCAGGGTGATCGGCTTGCCTGCAGTCGTTGCGGCACTGTc                 <  6:107732/149‑1 (MQ=255)                                                                                                                                     cTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGTTGCCGTCCGGGTCGCTGTCGTTGGCCAGCACGTTCAGGGTGATCGGCTTGCCTGCAGTCGTTGCGGCACTGTCg                >  8:180863/1‑149 (MQ=255)                                                                                                                                       gtgCTGCCGTCCGTGCTCACGCTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGGGACCGTGAGCGGTACGTTGCCGTCCGGGTCGCTGTCGTTGGCCAGCACGTTCAGGGTGATCGGCTTGCCTGCAGTCGTTGCGGCACTGTCGtt              <  4:269460/149‑1 (MQ=255)                                                                                                                                        tgctgcCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGTTGCCGTCCGGGTCGCTGTCGTTGGCCAGCACGTTCAGGGTGATCGGCTTGCCTGCAGTCGTTGCGGCACTGTCGTTg             <  5:116200/149‑1 (MQ=255)                                                                                                                                        tgcggcCGTCCGTGCTCCCGGTACCCGGGCCGGAGTGCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGTTGCCGTCCGGGTCGCTGTCGTTGGCCAGCACGTTCAGGGTGATCGGCTTGCCTGCAGTCGTTGCGGCACTGTCGtt              <  4:111572/148‑1 (MQ=255)                                                                                                                                                   gtGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGTTGCCGTCCGGGTCGCTGTCGTTGGCCAGCACGTTCAGGGTGATCGGCTTGCCTGCAGTCGTTGCGGCACTGTCGTTGGCCACGACAgg  <  2:284377/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CGCCACTGCTGGGGTGACGGCGATGCTGACCGTGGCCGGGGTCACCGAGTCGGCCCCCTTGGTATCACGCGCC‑GTGTAATTGAAGCTGGCCGTGAACGGCGTGGCGACCGTAGCGGGTGGGGTGTACGTCACTGTGCTGCCGTCCGTGCTCACGGTACCCTGGCCGGAGTCCGGCTGGCTGAGGCCGGTGACCGTGAGCGGTACGTTGCCGTCCGGGTCGCTGTCGTTGGCCAGCACGTTCAGGGTGATCGGCTTGCCTGCAGTCGTTGCGGCACTGTCGTTGGCCACGACAGG  >  NC_002947/3610579‑3610872

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.