New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4098170 =	52 (0.940)	3 (0.060)	3/242	NT	5.9%	coding (520/975 nt)	qor‑II	quinone oxidoreductase
	?	NC_002947	4098214 =	47 (0.900)					coding (476/975 nt)	qor‑II	quinone oxidoreductase

CTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCACCGGCCGCACCGTACAACAACACCTGGGTGCCCGGCCCTACGGCATAGGTGGTTTTCAACAGATATTGCGCCGTGAT  >  NC_002947/4098024‑4098317                                                                                                                                                   |                                                                                                                                                    cTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGgc                                                                                                                                                   >  1:92896/1‑149 (MQ=255)   gttggaggacgaggccgccgcagcggtgctgttcaagggaatcacggcgcaatatctgttgaaaaccacctatgccgtagggccgggcacccaggtgttgttgtacggtgcggccggtgctttgggccagctgatggtgccttgGgcgc                                                                                                                                                 <  6:237‑M1/5‑1 (MQ=255)    aaGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGgcg                                                                                                                                                  <  7:137230/147‑1 (MQ=255)     aGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGa                                                                                                                                               >  6:167553/1‑149 (MQ=255)       cGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATa                                                                                                                                             <  2:92896/149‑1 (MQ=255)             cTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCAccc                                                                                                                                       >  4:52714/1‑149 (MQ=255)             cTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCAccc                                                                                                                                       <  3:52714/149‑1 (MQ=255)             cTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCAccc                                                                                                                                       <  2:275518/149‑1 (MQ=255)                  ccACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGAGATACCACCCCTAt                                                                                                                                   >  3:261939/1‑148 (MQ=255)                   cACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCa                                                                                                                                 >  7:170172/1‑149 (MQ=255)                        aaTCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTc                                                                                                                            <  5:167553/149‑1 (MQ=255)                        aaTCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTc                                                                                                                            <  4:58106/149‑1 (MQ=255)                        aaTCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTc                                                                                                                            >  3:119539/1‑149 (MQ=255)                            gTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGccc                                                                                                                        >  5:326374/1‑149 (MQ=255)                                  tACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGgt                                                                                                                  >  7:115841/1‑149 (MQ=255)                                    cGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGgtgt                                                                                                                <  3:330726/149‑1 (MQ=255)                                    cGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGgtgt                                                                                                                >  1:232976/1‑149 (MQ=255)                                       ccACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTcgc                                                                                                             <  4:105181/149‑1 (MQ=255)                                        ggaatcacggcgcaatatctgttgaaaaccacctatgccgtagggccgggcacccaggtgttgttgtacggtgcggccggtgctttgggccagctgatggtgccttgGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTcgcg                                                                                                            <  5:279666‑M1/42‑1 (MQ=255)                                         acacCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCgcgc                                                                                                           >  2:267735/1‑149 (MQ=255)                                          aatcacggcgcaatatctgttgaaaaccacctatgccgtagggccgggcacccaggtgttgttgtacggtgcggccggtgctttgggccagctgatggtgccttgGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGcc                                                                                                          >  6:279666‑M1/106‑149 (MQ=255)                                             cttggccttggGGCAGCTCACGCTCCTGGCTGGCAAAGGTTTTTGCTGCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCaa                                                                                                       <  4:261939/149‑1 (MQ=255)                                              acggcgcaatatctgttgaaaaccacctatgccgtagggccgggcacccaggtgttgttgtacggtgcggccggtgctttgggccagctgatggtgccttgGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCaa                                                                                                       >  7:258289‑M1/102‑148 (MQ=255)                                                 gccttggGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGc                                                                                                    <  8:134823/148‑1 (MQ=255)                                                  ccttggGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCAc                                                                                                  >  6:167725/1‑149 (MQ=255)                                                  ccttggGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCAc                                                                                                  >  5:95145/1‑149 (MQ=255)                                                       ggTCAGCTCACCCACCTGGCTGGCCAAGGTTTTTGCGCCGAACACCAGCACATGCTGGCAACCCGCCGCCCGGGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGGCGCCCCCAGGTGTCGCGCCCAAGGCACCATCa                                                                                             <  1:2284/149‑1 (MQ=255)                                                        gTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAg                                                                                            >  6:232470/1‑149 (MQ=255)                                                        gTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAACAACAGCACAAGCTGGCAACCCGCCGCACCTGACCGCTCCACACTTTGCACCCGCGATACCACCCATAACAACGTCGCCCCCAGGTGTCGCGCACAAGGCACCAt                                                                                               >  5:261896/1‑146 (MQ=255)                                                            gCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTgg                                                                                        <  4:119539/149‑1 (MQ=255)                                                                aCGCACCTGGCTGGCCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGccc                                                                                     <  8:170172/148‑1 (MQ=255)                                                                aCGCACCTGGCTGGCCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGccc                                                                                     >  8:169564/1‑148 (MQ=255)                                                                aCGCACCTGGCTGGCCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGccc                                                                                     >  2:156664/1‑148 (MQ=255)                                                                      ctggctggCCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCAc                                                                              >  8:154506/1‑149 (MQ=255)                                                                           tggcCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCACCGGcc                                                                         >  4:342012/1‑149 (MQ=255)                                                                              ccAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCAcc                                                                             <  1:13235/142‑1 (MQ=255)                                                                              ccAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCAcc                                                                             >  2:13235/1‑142 (MQ=255)                                                                               cAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCACCGGCCGCAc                                                                     >  6:320918/1‑149 (MQ=255)                                                                                aaGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCACCGGCCGCAcc                                                                    <  5:232470/149‑1 (MQ=255)                                                                                    tttttGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCACCGGCCGCACCGTac                                                                <  7:154506/149‑1 (MQ=255)                                                                                              gAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAg                                                                                 <  6:175144/122‑1 (MQ=255)                                                                                              gAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAg                                                                                 >  5:175144/1‑122 (MQ=255)                                                                                                acacCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCACCGGCCGCACCGTACAACAACACCTgg                                                    <  6:326374/149‑1 (MQ=255)                                                                                                 cacCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCACCGGCCGCACCGTACAACAACACCTggg                                                   <  6:95145/149‑1 (MQ=255)                                                                                                  acCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCACCGGCCGCACCGTACAACAACACCTGGGt                                                  >  8:37769/1‑149 (MQ=255)                                                                                                      gCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCACCGGCCGCACCGTACAACAACACCTGGGTGccc                                              <  1:156664/149‑1 (MQ=255)                                                                                                                gCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCACCGGCCGCACCGTACAACAACACCTGGGTGCCCGGCCCTACgg                                    <  5:320918/149‑1 (MQ=255)                                                                                                                   aCCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCACCGGCCGCACCGTACAACAACACCTGGGTGCCCGGCCCTACGGCAt                                 <  7:169564/149‑1 (MQ=255)                                                                                                                        ccgccCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCACCGGCCGCACCGTACAACAACACCTGGGTGCCCGGCCCTACGGCATAggtg                            >  3:289974/1‑149 (MQ=255)                                                                                                                         cgccCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCACCGGCCGCACCGTACAACAACACCTGGGTGCCCGGCCCTACGGCATAggtgg                           >  2:43592/1‑149 (MQ=255)                                                                                                                           cccGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCACCTGCCGCACCGTACAACAACACCTGGGTGCCCGGCCCTACGGCATAGGTGGtt                         <  1:267735/149‑1 (MQ=255)                                                                                                                             cGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCACCGGCCGCACCGTACAACAACACCTGGGTGCCCGGCCCTACGGCATAGGTGGtttt                       <  1:67166/149‑1 (MQ=255)                                                                                                                                 cccGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCCGCTGGCCCAAAGCACCGGCCGCACCGTACAACAACACCTGGGTGCCCGGCCCTACGGCATAGGTGGTTTTCaa                    >  6:188298/1‑148 (MQ=255)                                                                                                                                  ccGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCACCGGCCGCACCg                                                                   >  7:52057/1‑100 (MQ=255)                                                                                                                                  ccGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCACCGGCCGCACCg                                                                   <  8:52057/100‑1 (MQ=255)                                                                                                                                   cGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCACCGGCCGCACCGTACAACAACACCTGGGTGCCCGGCCCTACGGCATAGGTGGTTTTCAACAg                 <  1:43592/149‑1 (MQ=255)                                                                                                                                          cacTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCACCGGCCGCACCGTACAACAACACCTGGGTGCCCGGCCCTACGGCATAGGTGGTTTTCTACAGATATTgc          <  5:167725/149‑1 (MQ=255)                                                                                                                                           acTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCACCGGCCGCACCGTGCAACAACACCTGGGTGCCCGGCCCTACGGCATAGGTGGTTTTCAACAGATATTgcg         >  6:203486/1‑149 (MQ=255)                                                                                                                                                  aGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCACCGGCCGCACCGTACAACAACACCTGGGTGCCCGGCCCTACGGCATAGGTGGTTTTCAACAGATATTGCGCCGTGAt  >  6:312949/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                    CTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGGTCAGCTCACGCACCTGGCTGGCCAAGGTTTTTGCGTCGAACACCAGCACATGCTGGCAACCCGCCGCCCGTGCCCGCTCCACACTTTGCAGGCGCGATACCACCCCTATCACCGTCGCCCCCAGGTGTCGCGCCCAAGGCACCATCAGCTGGCCCAAAGCACCGGCCGCACCGTACAACAACACCTGGGTGCCCGGCCCTACGGCATAGGTGGTTTTCAACAGATATTGCGCCGTGAT  >  NC_002947/4098024‑4098317

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.