New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4381278	39 (0.700)	6 (0.110)	4/242	NT	14.1%	coding (1512/2253 nt)	PP_3857	hypothetical protein
	?	NC_002947	= 4381320	36 (0.690)					coding (1470/2253 nt)	PP_3857	hypothetical protein

GACAGGTAGCACCAAGGCAATGGGATCGCAGCATCCATAGCGGTAACCGCTGCCTGATAGTCGCTGACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTGGCCGCCCACGCCGGCGATGGAGCACAAGTAGCGTA  >  NC_002947/4381132‑4381423                                                                                                                                                   |                                                                                                                                                   gACAGGTAGCACCAAGGCAATGGGATCGCAGCATCCATAGCGGTAACCGCTGCCTGATAGTCGCTGACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGgcgc                                                                                                                                                  >  6:64574/1‑149 (MQ=255)  aCAGGTAGCACCAAGGCAATGGGATCGCAGCATCCATAGCGGTAACCGCTGCCTGATAGTCGCTGAACCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGcc                                                                                                                                                 <  8:16166/149‑1 (MQ=255)         gCACCAAGGCAATGGGATCGCAGCATCCATAGCGGTAACCGCTGCCTGATAGTCGCTGACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGt                                                                                                                                          <  6:320612/149‑1 (MQ=255)          cACCAAGGCAATGGGATCGCAGCATCCATAGCGGTAACCGCTGCCTTATAGTCGCTGACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGTCGCCACACGGTa                                                                                                                                         <  3:96679/149‑1 (MQ=255)              aaGGCAATGGGATCGCAGCATCCATAGCGGTAACCGCTGCCTGATAGTCGCTGACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGAt                                                                                                                                      >  8:313500/1‑148 (MQ=255)              aaGGCAATGGGATCGCAGCATCCATAGCGGTAACCGCTGCCTGATAGTCGCTGACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATc                                                                                                                                     <  6:240218/149‑1 (MQ=255)                   aaTGGGATCGCAGCATCCATAGCGGTAACCGCTGCCTGATAGTCGCTGACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCccggcagatcgcgcaggcgc                                                                                                                                >  6:322725‑M1/1‑129 (MQ=255)                     tGGGATCGCAGCATCCATAGCGGTAACCGCTGCCTGATAGTCGCTGACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCcgc                                                                                                                              <  7:313500/149‑1 (MQ=255)                       ggATCGCAGCATCCATAGCGGTAACCGCTGCCTGATAGTCGCTGACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCcgcgc                                                                                                                            <  1:229467/149‑1 (MQ=255)                         aTCGCAGCATCCATAGCGGTAACCGCTGCCTGATAGTCGCTGACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCACAGCGGCGCCACACGGTAGATCATGCCgcgcgc                                                                                                                          >  8:9430/1‑149 (MQ=255)                                  tCCATAGCGGTAACCGCTGCCTGATAGTCGCTGACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGAt                                                                                                                 >  2:27818/1‑149 (MQ=255)                                          ggTAACCGCTGCCTGATAGTCGCTGACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCcg                                                                                                                               >  8:6249/1‑127 (MQ=255)                                          ggTAACCGCTGCCTGATAGTCGCTGACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCcg                                                                                                                               <  7:6249/127‑1 (MQ=255)                                             aaCCGCTGCCTGATAGTCGCTGACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCccggcagatcgcgcaggcgcgcggcatgatctaccgtgtggcgccg                                                                                                      >  8:128651‑M1/1‑103 (MQ=255)                                                 gCTGCCTGATAGTCGCTGACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCccggcagatcgcgcaggcgcgcggcatgatctaccgtgtggcgccgctga                                                                                                  <  7:128651‑M1/149‑51 (MQ=255)                                                 gCTGCCTGATAGTCGCTGACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCccggcagatcgcgcaggcgcgcggcatgatctaccgtgtggcgccgctga                                                                                                  <  5:322725‑M1/149‑51 (MQ=255)                                                   tGCCTGATAGTCGCTGACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGtca                                                                                               >  4:184309/1‑149 (MQ=255)                                                     ccTGATAGTCGCTGACCCAATCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGtcatc                                                                                             <  7:128354/149‑1 (MQ=255)                                                       tGATAGTCGCTGACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTTACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGtcatca                                                                                            >  7:324062/1‑148 (MQ=255)                                                       tGATAGTCGCTGACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGtc                                                                                                <  1:22627/144‑1 (MQ=255)                                                       tGATAGTCGCTGACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGtc                                                                                                >  2:22627/1‑144 (MQ=255)                                                                cTGACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAg                                                                                  >  4:75678/1‑149 (MQ=255)                                                                  gACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAggg                                                                                <  3:184309/149‑1 (MQ=255)                                                                   aCCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTGTCCGGGCCGCTGTCATCATATTGACCAggg                                                                                <  1:27818/149‑1 (MQ=255)                                                                    cccATTCGCGCATCGATGCTGCGTACGCCGCCTGCTTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCTGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTa                                                                              <  7:17212/149‑1 (MQ=255)                                                                     ccATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCccggcagatcgcgcaggcgcgcggcatgatctaccgtgtggcgccgctga                                                                                                  <  4:284167‑M1/129‑51 (MQ=255)                                                                     ccATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCccggcagatcgcgcaggcgcgcggcatgatctaccgtgtggcgccgctga                                                                                                  >  3:284167‑M1/1‑79 (MQ=255)                                                                           gcgcATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGaaa                                                                        <  3:75678/148‑1 (MQ=255)                                                                           gcgcATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAg                                                                       >  2:42424/1‑149 (MQ=255)                                                                                tCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGcc                                                                  <  2:154064/149‑1 (MQ=255)                                                                                      ctgcGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTg                                                               >  8:104615/1‑146 (MQ=255)                                                                                      ctgcGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTg                                                               <  7:104615/146‑1 (MQ=255)                                                                                           tACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCttttt                                                       >  7:323654/1‑149 (MQ=255)                                                                                           tACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCtttt                                                        >  4:11036/1‑148 (MQ=255)                                                                                              gccgccTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAg                                                                             >  6:63194/1‑124 (MQ=255)                                                                                              gccgccTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAg                                                                             <  5:63194/124‑1 (MQ=255)                                                                                                       gTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATa                                           <  5:64574/149‑1 (MQ=255)                                                                                                           tACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCaa                                                    >  3:308553/1‑136 (MQ=255)                                                                                                           tACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCaa                                                    <  4:308553/136‑1 (MQ=255)                                                                                                              cAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTgg                                    >  5:227362/1‑149 (MQ=255)                                                                                                                aCCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTGgcc                                  >  6:141461/1‑149 (MQ=255)                                                                                                                             cACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTGGCCGCCCACGCCGGc                      <  8:323654/148‑1 (MQ=255)                                                                                                                               ccGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTgg                                    >  7:244271/1‑132 (MQ=255)                                                                                                                               ccGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTgg                                    <  8:244271/132‑1 (MQ=255)                                                                                                                                cGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGTTCGAATAGGGCTGGCCGCCCACGCCGGCGATg                  <  1:42424/149‑1 (MQ=255)                                                                                                                                     gTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTGGCCGCCCACGCCGGCGATGGAGca             >  5:370422/1‑149 (MQ=255)                                                                                                                                            tCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGgccgctgagcatcacccacggtgaatctgagccggttggtaccacgcaggcggcgtacgcagcatcgatgcgcgaatgggtcagcgactatcaggcagc      <  5:322725‑M2/149‑100 (MQ=255)                                                                                                                                            tCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGgccgctgagcatcacccacggtgaatctgagccggttggtaccacgcaggcggcgtacgcagcatcgatgcgcgaatgggtcagcgactatcaggcagc      <  7:128651‑M2/149‑100 (MQ=255)                                                                                                                                            tCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGgccgctgagcatcacccacggtgaatctgagccggttggtaccacgcaggcggcgtacgcagcatcgatgcgcgaatgg                          >  3:284167‑M2/1‑50 (MQ=255)                                                                                                                                            tCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGgccgctgagcatcacccacggtgaatctgagccggttggtaccacgcaggcggcgtacgcagcatcgatgcgcgaatgg                          <  4:284167‑M2/129‑80 (MQ=255)                                                                                                                                              aGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTGGCCGCCCACGCCGGCGATGGAGCACAAGTAGCg    >  6:204726/1‑149 (MQ=255)                                                                                                                                                cggcgCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGgccgctgagcatcacccacggtgaatctgagccggttggtaccacgcaggcggcgtacgcagcatcgatgcgcgaatgggtcagcgactatcaggcagcggtt  >  8:128651‑M2/1‑46 (MQ=255)                                                                                                                                                   |                                                                                                                                                   GACAGGTAGCACCAAGGCAATGGGATCGCAGCATCCATAGCGGTAACCGCTGCCTGATAGTCGCTGACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTGGCCGCCCACGCCGGCGATGGAGCACAAGTAGCGTA  >  NC_002947/4381132‑4381423

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.