New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4381278	39 (0.700)	6 (0.110)	4/242	NT	14.1%	coding (1512/2253 nt)	PP_3857	hypothetical protein
	?	NC_002947	= 4381320	36 (0.690)					coding (1470/2253 nt)	PP_3857	hypothetical protein

TGCCTGATAGTCGCTGACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTGGCCGCCCACGCCGGCGATGGAGCACAAGTAGCGTATGCCAGTACCGCGCTCGTTCAGGTAGCGGTTCATGCCATTGGCA  >  NC_002947/4381182‑4381467                                                                                                                                            |                                                                                                                                                    tGCCTGATAGTCGCTGACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGtca                                                                                                                                           >  4:184309/1‑149 (MQ=255)   ccTGATAGTCGCTGACCCAATCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGtcatc                                                                                                                                         <  7:128354/149‑1 (MQ=255)     tGATAGTCGCTGACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTTACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGtcatca                                                                                                                                        >  7:324062/1‑148 (MQ=255)     tGATAGTCGCTGACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGtc                                                                                                                                            <  1:22627/144‑1 (MQ=255)     tGATAGTCGCTGACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGtc                                                                                                                                            >  2:22627/1‑144 (MQ=255)              cTGACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAg                                                                                                                              >  4:75678/1‑149 (MQ=255)                gACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAggg                                                                                                                            <  3:184309/149‑1 (MQ=255)                 aCCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTGTCCGGGCCGCTGTCATCATATTGACCAggg                                                                                                                            <  1:27818/149‑1 (MQ=255)                  cccATTCGCGCATCGATGCTGCGTACGCCGCCTGCTTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCTGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTa                                                                                                                          <  7:17212/149‑1 (MQ=255)                         gcgcATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGaaa                                                                                                                    <  3:75678/148‑1 (MQ=255)                         gcgcATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAg                                                                                                                   >  2:42424/1‑149 (MQ=255)                              tCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGcc                                                                                                              <  2:154064/149‑1 (MQ=255)                                    ctgcGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTg                                                                                                           >  8:104615/1‑146 (MQ=255)                                    ctgcGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTg                                                                                                           <  7:104615/146‑1 (MQ=255)                                         tACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCttttt                                                                                                   >  7:323654/1‑149 (MQ=255)                                         tACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCtttt                                                                                                    >  4:11036/1‑148 (MQ=255)                                            gccgccTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAg                                                                                                                         >  6:63194/1‑124 (MQ=255)                                            gccgccTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAg                                                                                                                         <  5:63194/124‑1 (MQ=255)                                                     gTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATa                                                                                       <  5:64574/149‑1 (MQ=255)                                                         tACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCaa                                                                                                >  3:308553/1‑136 (MQ=255)                                                         tACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCaa                                                                                                <  4:308553/136‑1 (MQ=255)                                                            cAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTgg                                                                                >  5:227362/1‑149 (MQ=255)                                                              aCCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTGgcc                                                                              >  6:141461/1‑149 (MQ=255)                                                                           cACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTGGCCGCCCACGCCGGc                                                                  <  8:323654/148‑1 (MQ=255)                                                                             ccGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTgg                                                                                <  8:244271/132‑1 (MQ=255)                                                                             ccGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTgg                                                                                >  7:244271/1‑132 (MQ=255)                                                                              cGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGTTCGAATAGGGCTGGCCGCCCACGCCGGCGATg                                                              <  1:42424/149‑1 (MQ=255)                                                                                   gTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTGGCCGCCCACGCCGGCGATGGAGca                                                         >  5:370422/1‑149 (MQ=255)                                                                                          tCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGgccgctgagcatcacccacggtgaatctgagccggttggtaccacgcaggcggcgtacgcagcatcgatgcgcgaatgggtcagcgactatcaggcagc                                                  <  7:128651‑M2/149‑100 (MQ=255)                                                                                          tCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGgccgctgagcatcacccacggtgaatctgagccggttggtaccacgcaggcggcgtacgcagcatcgatgcgcgaatgggtcagcgactatcaggcagc                                                  <  5:322725‑M2/149‑100 (MQ=255)                                                                                          tCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGgccgctgagcatcacccacggtgaatctgagccggttggtaccacgcaggcggcgtacgcagcatcgatgcgcgaatgg                                                                      <  4:284167‑M2/129‑80 (MQ=255)                                                                                          tCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGgccgctgagcatcacccacggtgaatctgagccggttggtaccacgcaggcggcgtacgcagcatcgatgcgcgaatgg                                                                      >  3:284167‑M2/1‑50 (MQ=255)                                                                                            aGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTGGCCGCCCACGCCGGCGATGGAGCACAAGTAGCg                                                >  6:204726/1‑149 (MQ=255)                                                                                              cggcgCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGgccgctgagcatcacccacggtgaatctgagccggttggtaccacgcaggcggcgtacgcagcatcgatgcgcgaatgggtcagcgactatcaggcagcggtt                                              >  8:128651‑M2/1‑46 (MQ=255)                                                                                                   ccACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTGGCCGCCCACGCCGGCGATGGAGCACAAGTAGCGTATGCCa                                         <  3:11036/149‑1 (MQ=255)                                                                                                          gTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTGGCCGCCCACGCCGGCGATg                                                              <  7:270513/121‑1 (MQ=255)                                                                                                             gATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTGGCCGCCCACGCCGGCGATGGAGCACAAGTAGCGTATGCCAGTACCgcgc                                <  6:227362/148‑1 (MQ=255)                                                                                                             gATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTGGCCGCCCACGCCGGCGATGGAGCACAAGTAGCGTATGCCAGTACCgcgc                                <  6:370422/148‑1 (MQ=255)                                                                                                                cATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTGGCCGCCCACGCCGGCGATGGAGcac                                                        >  7:65161/1‑121 (MQ=255)                                                                                                                cATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTGGCCGCCCACGCCGGCGATGGAGcac                                                        <  8:65161/121‑1 (MQ=255)                                                                                                                  tGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTGGCCTCCCACGCCGGCGATGGAGCACAAGTAGCGTATGCCAGTACCGCGCTCGtt                           >  3:193856/1‑148 (MQ=255)                                                                                                                        gcgcCTGCGCGATCTG‑CCGGgccgctgagcatcacccacggtgaatctgagccggttggtaccacgcaggcggcgtacgcagcatcgatgcgcgaatgggtcagcgactatcaggcagcggttaccgctatggatgctgcgatcccatt                    >  6:322725‑M2/1‑20 (MQ=255)                                                                                                                            cTGCGCGATCTG‑CCGGGCCGCTGTCATCACATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTGGCCGCCCACGCCGGCGATGGAGCACAAGTAGCGTATGCCAGTACCGCGCTCGTTCAGGTAGCGGt                >  3:167363/1‑149 (MQ=255)                                                                                                                             tGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTGGCCGCCCACGCCGGCGATGGAGCACAAGTAGCGTATGCCAGTACCGCGCTCGTTCAGGTAGCGGt                >  4:35849/1‑148 (MQ=255)                                                                                                                               cgcgATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTGGCCGCCCACGCCGGCGATGGAGCACAAGTAGCGTATGCCAGTACCGCGCTCGTTCAGGTAGCGGt                <  3:35849/146‑1 (MQ=255)                                                                                                                                      tG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTGGCCGCCCACGCCGGCGATGGAGCACAAGTAGCGTATGCCAGTACCGCGCTCGTTCAGGTAGCGGTTCATGCCAtt      >  4:81691/1‑149 (MQ=255)                                                                                                                                         ccGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTGGCCGCCCACGCCGGCGATGGAGCACAAGTAGCGTATGCCAGTACCGCGCTCGTTCAGGTAGCGGTTCATGCCATTg     <  5:141461/148‑1 (MQ=255)                                                                                                                                         ccGGGCCGCTGTCATCACATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTGGCCGCCCACGCCGGCGATGGAGCACAAGTAGCGTATGCCAGTACCGCGCTCGTTCAGGTAGCGGTTCATGCCATTgg    <  4:167363/149‑1 (MQ=255)                                                                                                                                           gggCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTGGCCGCCCACGCCGGCGATGGAGCACAAGTAGCGTATGCCAGTACCGCGCTCGTTCAGGTAGCGGTTCATGCCATTgg    >  2:188378/1‑147 (MQ=255)                                                                                                                                           gggCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTGGCCGCCCACGCCGGCGATGGAGCACAAGTAGCGTATGCCAGTACCGCGCTCGTTCAGGTAGCGGTTCATGCCATTgg    <  1:188378/147‑1 (MQ=255)                                                                                                                                            ggCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCCCCGTGCCCTTTTTCAAGCTCGAATAGGGCTGGCCGCCCACGCCGGCGATGGAGCACAAGTAGCGTATGCCAGTACCGCGCTCGTTCAGGTAGCGGTTCATGCCATTGGCa  >  4:278169/1‑148 (MQ=255)                                                                                                                                            |                                                                                                                                                    TGCCTGATAGTCGCTGACCCATTCGCGCATCGATGCTGCGTACGCCGCCTGCGTGGTACCAACCGGCTCAGATTCACCGTGGGTGATGCTCAGCGGCGCCACACGGTAGATCATGCCGCGCGCCTGCGCGATCTG‑CCGGGCCGCTGTCATCATATTGACCAGGGTAGTGAAAGTCGCCGTGCCCTTTTTCAAGCTCGAATAGGGCTGGCCGCCCACGCCGGCGATGGAGCACAAGTAGCGTATGCCAGTACCGCGCTCGTTCAGGTAGCGGTTCATGCCATTGGCA  >  NC_002947/4381182‑4381467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.