New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4430832	40 (0.720)	3 (0.060)	3/242	NT	6.9%	coding (602/1068 nt)	PP_3925	hypothetical protein
	?	NC_002947	= 4430864	43 (0.820)					coding (634/1068 nt)	PP_3925	hypothetical protein

AGGTGGACTACACCGCCTGCGGCCTGGCCGACCTGGGCAAGCCGGAGGGCTACGTGCAGCG‑CCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTGGGAAATGGCCACCCTGGGCGACCCACTCATGGACCT  >  NC_002947/4430685‑4430979                                                                                                                                                     |                                                                                                                                                    aGGTCGACTACACCGCCTGCGGCCTGGCCGACCTGGGCAAGCCGGAGGGCTACGTGCAGCG‑CCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGA                                                                                                                                                     >  3:281495‑M1/1‑148 (MQ=255)  ggTGGACTACACCGCCTGCGGCCTGGCCGACCTGGGCAAGCCGGAGGGCTACGTGCAGCG‑CCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGaaa                                                                                                                                                   <  2:239196/149‑1 (MQ=255)    tGGACTACACCGCCTGCGGCCTGGCCGACCTGGGCAAGCCGGAGGGCTACGTGCAGCG‑CCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGaaaa                                                                                                                                                  >  4:154166/1‑148 (MQ=255)      gACTACACCGCCTGCGGCCTGGCCGACCTGGGCAAGCCGGAGGGCTACGTGCAGCG‑CCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAAt                                                                                                                                               <  6:120067/149‑1 (MQ=255)         tACACCGCCTGCGGCCTGGCCGACCTGGGCAAGCCGGAGGGCTACGTGCAGCGAACAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATgc                                                                                                                                             >  1:274024/1‑149 (MQ=255)            acCGCCTGCGGCCTGGCCGACCTGGGCAAGCCGGAGGGCTACGTGCAGCG‑CCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATgccggc                                                                                                                                         >  1:90040/1‑149 (MQ=255)                ccTGCGGCCTGGCCGACCTGGGCAAGCCGGAGGGCTACGTGCAGCG‑CCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGac                                                                                                                                     <  1:32523/149‑1 (MQ=255)                  tGCGGCCTGGCCGACCTGGGCAAGCCGGAGGGCTACGTGCAGCG‑CCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATgcc                                                                                                                                            <  5:211616/140‑1 (MQ=255)                  tGCGGCCTGGCCGACCTGGGCAAGCCGGAGGGCTACGTGCAGCG‑CCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATgcc                                                                                                                                            >  6:211616/1‑140 (MQ=255)                       ccTGGCCGACCTGGGCAAGCCGGAGGGCTACGTGCAGCG‑CCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCcgc                                                                                                                              <  4:281495/149‑1 (MQ=255)                           gCCGACCTGGGCAAGCCGGAGGGCTACGTGCAGCG‑CCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGCCCCCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGccc                                                                                                                          >  3:204037/1‑149 (MQ=255)                           gCCGACCTGGGCAAGCCGGAGGGCTACGTGCAGCG‑CCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGccc                                                                                                                          >  3:199436/1‑149 (MQ=255)                           gCCGACCTGGGCAAGCCGGAGGGCTACGTGCAGCG‑CCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGcc                                                                                                                           >  5:220145/1‑148 (MQ=255)                           gCCGACCTGGGCAAGCCGGAGGGCTACGTGCAGCG‑CCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGG‑CGACCACCCGCGcc                                                                                                                           >  2:38388/1‑147 (MQ=255)                                ccTGGGCAAGCCGGAGGGCTACGTGCAGCG‑CCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAtgcctgggcgcgggtggtcggccggcattttt                                                                                                                     <  5:312062‑M1/149‑33 (MQ=255)                                    ggCAAGCCGGAGGGCTACGTGCAGCG‑CCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCAtcgt                                                                                                                 >  2:87820‑M2/1‑145 (MQ=255)                                     gCAAGCCGGAGGGCTACGTGCAGCG‑CCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCAtcgtg                                                                                                                >  4:241189‑M2/1‑144 (MQ=255)                                     gCAAGCCGGAGGGCTACGTGCAGCG‑CCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCAtcgtg                                                                                                                >  6:4338‑M2/1‑144 (MQ=255)                                       aaGCCGGAGGGCTACGTGCAGCG‑CCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCAtcgtgca                                                                                                              >  2:274024‑M2/1‑142 (MQ=255)                                            ggAGGGCTACGTGCAGCG‑CCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAAc                                                                                                          >  2:358559/1‑148 (MQ=255)                                              aGGGCTACGTGCAGCG‑CCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGa                                                                                                                                      <  5:61947/118‑1 (MQ=255)                                              aGGGCTACGTGCAGCG‑CCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGa                                                                                                                                      >  6:61947/1‑118 (MQ=255)                                                ggCTACGTGCAGCG‑CCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTa                                                                                                     <  7:211267/149‑1 (MQ=255)                                                ggCTACGTGCAGCG‑CCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTa                                                                                                     >  7:303784/1‑149 (MQ=255)                                                  cTACGTGCAGCG‑CCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTAcc                                                                                                   >  7:139791/1‑149 (MQ=255)                                                      gTGCAGCG‑CCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGtt                                                                                               <  2:90040/149‑1 (MQ=255)                                                       tGCAGCG‑CCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTc                                                                                              <  6:220145/149‑1 (MQ=255)                                                           atctccAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGAc                                                                                           <  3:229109/145‑1 (MQ=255)                                                             g‑cCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAAc                                                                                        <  1:358559/149‑1 (MQ=255)                                                                cAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGAc                                                                                           >  4:229109/1‑144 (MQ=255)                                                                    tCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGaaaaaa                                                                                                                                                <  3:171444/87‑1 (MQ=255)                                                                    tCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGaaaaaa                                                                                                                                                >  4:171444/1‑87 (MQ=255)                                                                    tCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGCCCACCCGCGCCCAGGCATCGTGCACAACGCCTACCGGTTCGACAACGTCATc                                                                                  >  6:284557/1‑149 (MQ=255)                                                                      gAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCt                                                                                <  1:101775/149‑1 (MQ=255)                                                                               aCCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGa                                                                       <  8:139791/149‑1 (MQ=255)                                                                                       ttATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCa                                                               >  3:257677/1‑149 (MQ=255)                                                                                         aTGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCAt                                                              <  4:257677/148‑1 (MQ=255)                                                                                             aaaaGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCAt                                                              >  5:141852/1‑144 (MQ=255)                                                                                             aaaaGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCAt                                                              <  6:141852/144‑1 (MQ=255)                                                                                                 gCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGG‑CGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCatcatc                                                    <  1:38388/149‑1 (MQ=255)                                                                                                       acacCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACTACCCCATGCGCATCATCGgtgt                                               <  7:224467/149‑1 (MQ=255)                                                                                                       acacCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGgtgt                                               >  5:235886/1‑149 (MQ=255)                                                                                                         acCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAtgcctgggcgcgggtggtcggccggcattttttcgtgca                                                                                                              <  2:83396‑M1/84‑40 (MQ=255)                                                                                                         acCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAtgcctgggcgcgggtggtcggccggcattttttcgtgca                                                                                                              >  1:83396‑M1/1‑45 (MQ=255)                                                                                                           cGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTg                                           <  3:154166/149‑1 (MQ=255)                                                                                                               tGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACt                                       <  4:199436/149‑1 (MQ=255)                                                                                                               tGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCAGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACt                                       <  4:204037/149‑1 (MQ=255)                                                                                                                  gcCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTgg                                     >  3:13039/1‑148 (MQ=255)                                                                                                                                         ccTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTGGGAAATGGCCACCCTGGGCGACCCa             <  6:235886/149‑1 (MQ=255)                                                                                                                                               tGCACGAtgcctgggcgcgggtggtcggccggcattttttcgtgcagccaggcggttaccgtttcccagcgtggcgcatccggtgtcagggctttttcataacggctggtccagccctcgatctggcgctgcacgtagccctccggctt       >  2:274024‑M1/1‑7 (MQ=255)                                                                                                                                               tGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCAtcgtgcagccaggcggttaccgtttcccagcgtggcgcatccggt                                                                        <  2:83396‑M2/84‑46 (MQ=255)                                                                                                                                               tGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCAtcgtgcagccaggcggttaccgtttcccagcgtggcgcatccggt                                                                        >  1:83396‑M2/1‑39 (MQ=255)                                                                                                                                               tGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTggg                                    <  1:211484/120‑1 (MQ=255)                                                                                                                                               tGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTggg                                    >  2:211484/1‑120 (MQ=255)                                                                                                                                               tGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTGGGAAATGGCCACCCTGGGCGACCCACTCATg       >  3:127311/1‑149 (MQ=255)                                                                                                                                                 cACGAtgcctgggcgcgggtggtcggccggcattttttcgtgcagccaggcggttaccgtttcccagcgtggcgcatccggtgtcagggctttttcataacggctggtccagccctcgatctggcgctgcacgtagccctccggcttgc     >  6:4338‑M1/1‑5 (MQ=255)                                                                                                                                                 cACGAtgcctgggcgcgggtggtcggccggcattttttcgtgcagccaggcggttaccgtttcccagcgtggcgcatccggtgtcagggctttttcataacggctggtccagccctcgatctggcgctgcacgtagccctccggcttgc     >  4:241189‑M1/1‑5 (MQ=255)                                                                                                                                                  aCGAtgcctgggcgcgggtggtcggccggcattttttcgtgcagccaggcggttaccgtttcccagcgtggcgcatccggtgtcagggctttttcataacggctggtccagccctcgatctggcgctgcacgtagccctccggcttgcc    >  2:87820‑M1/1‑4 (MQ=255)                                                                                                                                                    gAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTgg                                     <  2:23524/114‑1 (MQ=255)                                                                                                                                                    gAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTgg                                     >  1:23524/1‑114 (MQ=255)                                                                                                                                                    gAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTGGGAAATGGCCACCCTGGGCGACCCACTCATGGACCt  >  5:194580/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    AGGTGGACTACACCGCCTGCGGCCTGGCCGACCTGGGCAAGCCGGAGGGCTACGTGCAGCG‑CCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTGGGAAATGGCCACCCTGGGCGACCCACTCATGGACCT  >  NC_002947/4430685‑4430979

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.