New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4430832	40 (0.720)	3 (0.060)	3/242	NT	6.9%	coding (602/1068 nt)	PP_3925	hypothetical protein
	?	NC_002947	= 4430864	43 (0.820)					coding (634/1068 nt)	PP_3925	hypothetical protein

GGCAAGCCGGAGGGCTACGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTGGGAAATGGCCACCCTGGGCGACCCACTCATGGACCTGGGCAACTGCCTAGCCTACTGGATCGAA  >  NC_002947/4430720‑4431007                                                                                                                                                 |                                                                                                                                                ggCAAGCCGGAGGGCTACGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCAtcgt                                                                                                                                             >  2:87820‑M2/1‑145 (MQ=255)  gCAAGCCGGAGGGCTACGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCAtcgtg                                                                                                                                            >  4:241189‑M2/1‑144 (MQ=255)  gCAAGCCGGAGGGCTACGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCAtcgtg                                                                                                                                            >  6:4338‑M2/1‑144 (MQ=255)    aaGCCGGAGGGCTACGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCAtcgtgca                                                                                                                                          >  2:274024‑M2/1‑142 (MQ=255)         ggAGGGCTACGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAAc                                                                                                                                      >  2:358559/1‑148 (MQ=255)             ggCTACGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTa                                                                                                                                 >  7:303784/1‑149 (MQ=255)             ggCTACGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTa                                                                                                                                 <  7:211267/149‑1 (MQ=255)               cTACGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTAcc                                                                                                                               >  7:139791/1‑149 (MQ=255)                   gTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGtt                                                                                                                           <  2:90040/149‑1 (MQ=255)                    tGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTc                                                                                                                          <  6:220145/149‑1 (MQ=255)                       atctccAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGAc                                                                                                                       <  3:229109/145‑1 (MQ=255)                          gcCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAAc                                                                                                                    <  1:358559/149‑1 (MQ=255)                            cAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGAc                                                                                                                       >  4:229109/1‑144 (MQ=255)                                tCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGCCCACCCGCGCCCAGGCATCGTGCACAACGCCTACCGGTTCGACAACGTCATc                                                                                                              >  6:284557/1‑149 (MQ=255)                                  gAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCt                                                                                                            <  1:101775/149‑1 (MQ=255)                                           aCCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGa                                                                                                   <  8:139791/149‑1 (MQ=255)                                                   ttATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCa                                                                                           >  3:257677/1‑149 (MQ=255)                                                     aTGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCAt                                                                                          <  4:257677/148‑1 (MQ=255)                                                         aaaaGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCAt                                                                                          >  5:141852/1‑144 (MQ=255)                                                         aaaaGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCAt                                                                                          <  6:141852/144‑1 (MQ=255)                                                             gCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGG‑CGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCatcatc                                                                                <  1:38388/149‑1 (MQ=255)                                                                   acacCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACTACCCCATGCGCATCATCGgtgt                                                                           <  7:224467/149‑1 (MQ=255)                                                                   acacCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGgtgt                                                                           >  5:235886/1‑149 (MQ=255)                                                                       cGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTg                                                                       <  3:154166/149‑1 (MQ=255)                                                                           tGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACt                                                                   <  4:199436/149‑1 (MQ=255)                                                                           tGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCAGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACt                                                                   <  4:204037/149‑1 (MQ=255)                                                                              gcCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTgg                                                                 >  3:13039/1‑148 (MQ=255)                                                                                                     ccTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTGGGAAATGGCCACCCTGGGCGACCCa                                         <  6:235886/149‑1 (MQ=255)                                                                                                           tGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCAtcgtgcagccaggcggttaccgtttcccagcgtggcgcatccggt                                                                                                    <  2:83396‑M2/84‑46 (MQ=255)                                                                                                           tGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCAtcgtgcagccaggcggttaccgtttcccagcgtggcgcatccggt                                                                                                    >  1:83396‑M2/1‑39 (MQ=255)                                                                                                           tGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTggg                                                                <  1:211484/120‑1 (MQ=255)                                                                                                           tGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTggg                                                                >  2:211484/1‑120 (MQ=255)                                                                                                           tGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTGGGAAATGGCCACCCTGGGCGACCCACTCATg                                   >  3:127311/1‑149 (MQ=255)                                                                                                                gAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTgg                                                                 <  2:23524/114‑1 (MQ=255)                                                                                                                gAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTgg                                                                 >  1:23524/1‑114 (MQ=255)                                                                                                                gAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTGGGAAATGGCCACCCTGGGCGACCCACTCATGGACCt                              >  5:194580/1‑149 (MQ=255)                                                                                                                  aaaaaTGCCGGCCGACCACCCGCGCCCAGGCAtcgtgcagccaggcggttaccgtttcccagcgtggcgcatccggtgtcagggctttttcataacggctggtccagccctcgatctggcgctgcacgtagccctccggcttgcccagg                            <  5:312062‑M2/149‑118 (MQ=255)                                                                                                                  aaaaaTGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTGGGa                                                               >  2:337998/1‑114 (MQ=255)                                                                                                                  aaaaaTGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTGGGa                                                               <  1:337998/114‑1 (MQ=255)                                                                                                                   aaaaTGCCGGCCGACCACCCGCGCCCAGGCATCGTGGACAACGACTACCGGTTCGCCAACGTCATCCTGGACGCGGACAACCCCATGCGCATCACCGGGGTGCTGGACTGGGAAATGGCCACCCTGGGCGACCCACTCATGGACCTggg                           >  3:275278/1‑149 (MQ=255)                                                                                                                     aaTGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTGGGAAATGGCCACCCTGGGCGACCCACTCATGGACCTGGGCa                         <  6:194580/149‑1 (MQ=255)                                                                                                                      aTGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACCACCCCATGCGCATCATCGGTGTGCTGGACGGGGAAATGGCCACCCTGGGCGACCCAGTCATGGACCGGGGCaa                        >  2:92186/1‑149 (MQ=255)                                                                                                                               gACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGgtgt                                                                           >  2:81158/1‑89 (MQ=255)                                                                                                                               gACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGgtgt                                                                           <  1:81158/89‑1 (MQ=255)                                                                                                                                accaccCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTGGGAAATGGCCACCCTGGGCGACCCACTCATGGACCTGGGCAACTgcctagcc              >  7:26048/1‑149 (MQ=255)                                                                                                                                accaccCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTGGGAAATGGCCACCCTGGGCGACCCACTCATGGACCTGGGCAACTgcctagcc              >  7:31533/1‑149 (MQ=255)                                                                                                                                   accCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTGGGAAATGGCCACCCTGGGCGACCCACTCATGGACCTGGGCAACTGCCTAGCCTAc           >  7:145011/1‑149 (MQ=255)                                                                                                                                     ccGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTGGGAAATGGCCACCCTGGGCGACCCACTCATGGACCTGGGCAACTGCCTAGCCTACTg         >  2:199561/1‑149 (MQ=255)                                                                                                                                            cAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTGGGAAATGGCCACCCTGGGCGACCCACTCATGGACCTGGGCAACTGCCTAGCCTACTGGATCGaa  <  8:26048/149‑1 (MQ=255)                                                                                                                                            cAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTGGGAAATGGCCACCCTGGGCGACCCACTCATGGACCTGGGCAACTGCCTAGCCTACTGGATCGaa  <  8:31533/149‑1 (MQ=255)                                                                                                                                            cAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTCGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTGGCAAATGGCCACCCTGGGCGACCCACTCATGGACCTGGGCAACTGCCTAGCCTACTGGATCGaa  <  8:303784/149‑1 (MQ=255)                                                                                                                                             aGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTGGGAAATGGCCACCCTgg                                                 >  7:6491/1‑101 (MQ=255)                                                                                                                                             aGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTGGGAAATGGCCACCCTgg                                                 <  8:6491/101‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                GGCAAGCCGGAGGGCTACGTGCAGCGCCAGATCGAGGGCTGGACCAGCCGTTATGAAAAAGCCCTGACACCGGATGCGCCACGCTGGGAAACGGTAACCGCCTGGCTGCACGAAAAAATGCCGGCCGACCACCCGCGCCCAGGCATCGTGCACAACGACTACCGGTTCGACAACGTCATCCTGGACGCGGACAACCCCATGCGCATCATCGGTGTGCTGGACTGGGAAATGGCCACCCTGGGCGACCCACTCATGGACCTGGGCAACTGCCTAGCCTACTGGATCGAA  >  NC_002947/4430720‑4431007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.