New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4662033 =	39 (0.700)	6 (0.120)	5/240	NT	14.7%	coding (897/2715 nt)	nuoG	NADH‑quinone oxidoreductase subunit G
	?	NC_002947	4662125 =	33 (0.640)					coding (989/2715 nt)	nuoG	NADH‑quinone oxidoreductase subunit G

AAACCGCTTCAACGGTTCGGTCAACCAGTACTTCCTGTGCGACCGCGGCCGCTTCGGCTACGGCTACGTCAACCGCAAGGACCGCCCACGCCAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTGGCGAACTGGCCCGCGTACGCCTGGC  >  NC_002947/4661886‑4662179                                                                                                                                                    |                                                                                                                                                   aaaCCGCTTCAACGGTTCGGTCAACCAGTACTTCCTGTGCGACCGCGGCCGCTTCGGCTACGGCTACGTCAACCGCAAGGACCGCCCACGCCAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGgccg                                                                                                                                                   <  6:321526/149‑1 (MQ=255)    ggtcttcaccgagcacgaacacggcgtcgtggtcttcgatgtcgcgcagggtcggcacgggcagcgggctgttgttcagcacgttcagggccaggcgtacgcgggccagttcgccagcttccatgcccgagtagaagtactcggCGcc                                                                                                                                                 <  3:249601‑M1/4‑1 (MQ=255)    ccGCTTCAACGGTTCGGTCAACCAGTACTTCCTGTGCGACCGCGGCCGCTTCGGCTACGGCTACGTCAACCGCAAGGACCGCCCACGCCAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGccgccg                                                                                                                                                <  7:174276/149‑1 (MQ=255)      tcttcaccgagcacgaacacggcgtcgtggtcttcgatgtcgcgcagggtcggcacgggcagcgggctgttgttcagcacgttcagggccaggcgtacgcgggccagttcgccagcttccatgcccgagtagaagtactcggCGCCGAc                                                                                                                                              >  4:306528‑M1/143‑149 (MQ=255)      gCTTCAACGGTTCGGTCAACCAGTACTTCCTGTGCGACCGCGGCCGCTTCGGCTACGGCTACGTCAACCGCAAGGACCGCCCACGCCAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGgccg                                                                                                                                                   >  6:19878/1‑144 (MQ=255)      gCTTCAACGGTTCGGTCAACCAGTACTTCCTGTGCGACCGCGGCCGCTTCGGCTACGGCTACGTCAACCGCAAGGACCGCCCACGCCAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGgccg                                                                                                                                                   <  5:19878/144‑1 (MQ=255)       cttcaccgagcacgaacacggcgtcgtggtcttcgatgtcgcgcagggtcggcacgggcagcgggctgttgttcagcacgttcagggccaggcgtacgcgggccagttcgccagcttccatgcccgagtagaagtactcggCGCCGAcc                                                                                                                                             <  3:199317‑M1/8‑1 (MQ=255)                   ggTCAACCAGTACTTCCTGTGCGACCGCGGCCGCTTCGGCTACGGCTACGTCAACCGCAAGGACCGCCCACGCCAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGcc                                                                                                                                 <  6:130741/149‑1 (MQ=255)                     tCAACCAGTACTTCCTGTGCGACCGCGGCCGCTTCGGCTACGGCTACGTCAACCGCAAGGACCGCCCACGCCAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCg                                                                                                                                >  6:99252/1‑148 (MQ=255)                          cAGTACTTCCTGTGCGACCGCGGCCGCTTCGGCTACGGCTACGTCAACCGCAAGGACCGCCCACGCCAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCAt                                                                                                                          >  1:308816/1‑149 (MQ=255)                               cTTCCTGTGCGACCGCGGCCGCTTCGGCTACGGCTACGTCAACCGCAAGGACCGCCCACGCCAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCAtcgtc                                                                                                                      <  4:302120/148‑1 (MQ=255)                                   cTGTGCGACCGCGGCCGCTTCGGCTACGGCTACGTCAACCGCAAGGACCGCCCACGCCAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGc                                                                                                                                  >  6:130246/1‑132 (MQ=255)                                   cTGTGCGACCGCGGCCGCTTCGGCTACGGCTACGTCAACCGCAAGGACCGCCCACGCCAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGc                                                                                                                                  <  5:130246/132‑1 (MQ=255)                                      ttcgatgtcgcgcagggtcggcacgggcagcgggctgttgttcagcacgttcagggccaggcgtacgcgggccagttcgccagcttccatgcccgagtagaagtactcggCGCCGa                                                                                                                                               <  3:315975‑M1/6‑1 (MQ=255)                                      ttcgatgtcgcgcagggtcggcacgggcagcgggctgttgttcagcacgttcagggccaggcgtacgcgggccagttcgccagcttccatgcccgagtagaagtactcggCGCCGa                                                                                                                                               >  4:315975‑M1/111‑116 (MQ=255)                                      tgCGACCGCGGCCGCTTCGGCTACGGCTACGTCAACCGCAAGGACCGCCCACGCCAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCg                                                                                                               <  8:195997/148‑1 (MQ=255)                                            cgcgGCCGCTTCGGCTACGGCTACGTCAACCGCAAGGACCGCCCACGCCAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGcc                                                                                                        <  2:278874/149‑1 (MQ=255)                                                gCCGCTTCGGCTACGGCTACGTCAACCGCAAGGACCGCCCACGCCAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCAcgc                                                                                                    >  6:187336/1‑149 (MQ=255)                                                        ggctacggctacGTCAACCGCAAGGACCGCCCACGCCAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGcc                                                                                                 >  6:104718/1‑144 (MQ=255)                                                        ggctacggctacGTCAACCGCAAGGACCGCCCACGCCAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGcc                                                                                                 <  5:104718/144‑1 (MQ=255)                                                             cggctacgTCAACCGCAAGGACCGCCCACGCCAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGaaa                                                                                       <  5:99252/149‑1 (MQ=255)                                                              gggcagcgggctgttgttcagcacgttcagggccaggcgtacgcgggccagttcgccagcttccatgcccgagtagaagtactcggCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCTCCAGCCTCGAAAg                                                                                      <  1:308911‑M1/63‑1 (MQ=255)                                                               gctacgTCAACCGCAAGGCCCGCCCACGCCAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAg                                                                                      >  5:292599/1‑148 (MQ=255)                                                                   cgTCAACCGCAAGGACCGCCCACGCCAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCaa                                                                                   <  2:308816/147‑1 (MQ=255)                                                                    gTCAACCGCAAGGACCGCCCACGCCAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTc                                                                                           <  5:320286/138‑1 (MQ=255)                                                                    gTCAACCGCAAGGACCGCCCACGCCAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTc                                                                                           >  6:320286/1‑138 (MQ=255)                                                                       aaCCGCAAGGACCGCCCACGCCAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACgg                                                                             >  4:84728/1‑149 (MQ=255)                                                                          cGCAAGGACCTCCCACGCCAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCAGCTACGCGGCCGTACCATCGTCTGTATCGGCTCGCCACGCGCCAGCCTCTAAAGCAACTACGGCCt                                                                          <  4:129125/149‑1 (MQ=255)                                                                                cagcacgttcagggccaggcgtacgcgggccagttcgccagcttccatgcccgagtagaagtactcggCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGt                                                                      <  2:87523‑M1/79‑1 (MQ=255)                                                                                   cGCCCACGCCAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCt                                                                 >  8:158926/1‑149 (MQ=255)                                                                                    gCCCACGCCAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTg                                                                <  6:292599/149‑1 (MQ=255)                                                                                     cccACGCCAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTAt                                                                                                                 <  5:164871/99‑1 (MQ=255)                                                                                     cccACGCCAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTAt                                                                                                                 >  6:164871/1‑99 (MQ=255)                                                                                          agggccaggcgtacgcgggccagttcgccagcttccatgcccgagtagaagtactcggCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGgc                                                          >  1:87523‑M1/59‑149 (MQ=255)                                                                                            ggccaggcgtacgcgggccagttcgccagcttccatgcccgagtagaagtactcggCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGgcgc                                                        >  4:199317‑M1/57‑149 (MQ=255)                                                                                             gccaggcgtacgcgggccagttcgccagcttccatgcccgagtagaagtactcggCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGgc                                                          >  2:262829‑M1/56‑146 (MQ=255)                                                                                             gccaggcgtacgcgggccagttcgccagcttccatgcccgagtagaagtactcggCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGgc                                                          <  1:262829‑M1/91‑1 (MQ=255)                                                                                                cacaACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAg                                                    >  1:150667/1‑149 (MQ=255)                                                                                                cacaACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAg                                                    <  5:187336/149‑1 (MQ=255)                                                                                                        gCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCg                                                                                                               >  6:107335/1‑82 (MQ=255)                                                                                                        gCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCg                                                                                                               <  5:107335/82‑1 (MQ=255)                                                                                                        gCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTa                                            >  3:55695/1‑149 (MQ=255)                                                                                                              ggCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCggg                                      <  3:58231/149‑1 (MQ=255)                                                                                                                   cAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGc                                                                  <  3:262946/116‑1 (MQ=255)                                                                                                                   cAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGc                                                                  >  4:262946/1‑116 (MQ=255)                                                                                                                   cAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATgg                                 <  2:150667/149‑1 (MQ=255)                                                                                                                   cAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATg                                  >  7:129985/1‑148 (MQ=255)                                                                                                                     aGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGaa                               <  3:109478/149‑1 (MQ=255)                                                                                                                           gCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTGGc                         >  4:249601/1‑149 (MQ=255)                                                                                                                                gACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACtt                                               <  1:133183/122‑1 (MQ=255)                                                                                                                                gACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACtt                                               >  2:133183/1‑122 (MQ=255)                                                                                                                                        ccTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTGGCGAACTGGCCcgcg            >  6:354267/1‑149 (MQ=255)                                                                                                                                         cTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTGGCGAACTGGCCCGCGt           <  7:158926/149‑1 (MQ=255)                                                                                                                                          ttgACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCCGCCTCGAAAGCAAATACTTCCTGCTTGAGCTGGTCGGCGCCGAGTAATTCTACACGGGCATGGAAGCTAGCGAACTGGCCCGCGt           >  6:267104/3‑148 (MQ=255)                                                                                                                                                 ggCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTGGCGAACTGGCCTGCGTACGCCTgg   >  7:278624/1‑149 (MQ=255)                                                                                                                                                  gccgccGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTGGCGAACTGGCCCGCGTACGCCTGGc  <  3:84728/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   AAACCGCTTCAACGGTTCGGTCAACCAGTACTTCCTGTGCGACCGCGGCCGCTTCGGCTACGGCTACGTCAACCGCAAGGACCGCCCACGCCAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTGGCGAACTGGCCCGCGTACGCCTGGC  >  NC_002947/4661886‑4662179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.