New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4662033 =	39 (0.700)	6 (0.120)	5/240	NT	14.7%	coding (897/2715 nt)	nuoG	NADH‑quinone oxidoreductase subunit G
	?	NC_002947	4662125 =	33 (0.640)					coding (989/2715 nt)	nuoG	NADH‑quinone oxidoreductase subunit G

CAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGCCCGTGCCGACCCTGCGCGACATCGAAGACCACGACGCCGTGTTCGTGCTCGGTGAAGACCTGACC  >  NC_002947/4661977‑4662273                                                                                                                                                     |                                                                                                                                                      ggccaggcgtacgcgggccagttcgccagcttccatgcccgagtagaagtactcggCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGgcgc                                                                                                                                                       >  4:199317‑M1/57‑149 (MQ=255)     cacaACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAg                                                                                                                                                   >  1:150667/1‑149 (MQ=255)     cacaACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAg                                                                                                                                                   <  5:187336/149‑1 (MQ=255)             gCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTa                                                                                                                                           >  3:55695/1‑149 (MQ=255)                   ggCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCggg                                                                                                                                     <  3:58231/149‑1 (MQ=255)                        cAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATgg                                                                                                                                <  2:150667/149‑1 (MQ=255)                        cAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATg                                                                                                                                 >  7:129985/1‑148 (MQ=255)                          aGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGaa                                                                                                                              <  3:109478/149‑1 (MQ=255)                                gCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTG‑Gc                                                                                                                       >  4:249601/1‑149 (MQ=255)                                     gACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACtt                                                                                                                                              <  1:133183/122‑1 (MQ=255)                                     gACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACtt                                                                                                                                              >  2:133183/1‑122 (MQ=255)                                             ccTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCcgcg                                                                                                          >  6:354267/1‑149 (MQ=255)                                              cTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGt                                                                                                         <  7:158926/149‑1 (MQ=255)                                               ttgACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCCGCCTCGAAAGCAAATACTTCCTGCTTGAGCTGGTCGGCGCCGAGTAATTCTACACGGGCATGGAAGCTA‑GCGAACTGGCCCGCGt                                                                                                         >  6:267104/3‑148 (MQ=255)                                                      ggCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCTGCGTACGCCTgg                                                                                                 >  7:278624/1‑149 (MQ=255)                                                       gccgccGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGc                                                                                                <  3:84728/149‑1 (MQ=255)                                                        gcgccgaccagctcacgcaggccgtagttgctttcgaggctggcgcgtggcgagccgataccgacgatggtacggccgcgtagcaggtcggcgCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGcc                                                                                               >  4:199317‑M2/94‑149 (MQ=255)                                                          gccgaccagctcacgcaggccgtagttgctttcgaggctggcgcgtggcgagccgataccgacgatggtacggccgcgtagcaggtcggcgCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGc                                                                                                >  2:262829‑M2/92‑146 (MQ=255)                                                          gccgaccagctcacgcaggccgtagttgctttcgaggctggcgcgtggcgagccgataccgacgatggtacggccgcgtagcaggtcggcgCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGc                                                                                                <  1:262829‑M2/55‑1 (MQ=255)                                                          gccgaccagctcacgcaggccgtagttgctttcgaggctggcgcgtggcgagccgataccgacgatggtacggccgcgtagcaggtcggcgCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCt                                                                                             >  1:87523‑M2/92‑149 (MQ=255)                                                              ACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCTGAAc                                                                                         >  4:55695‑M1/1‑149 (MQ=255)                                                                   cTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCt                                                                                    <  5:354267/149‑1 (MQ=255)                                                                   cTACGCGGCCGTACCATCGTCGGTATCAGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCt                                                                                    <  3:178475/149‑1 (MQ=255)                                                                      acgcaggccgtagttgctttcgaggctggcgcgtggcgagccgataccgacgatggtacggccgcgtagcaggtcggcgCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTg                                                                                   <  2:87523‑M2/68‑1 (MQ=255)                                                                                  aTCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCt                                                                     <  5:267104/149‑1 (MQ=255)                                                                                      tcgGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGccc                                                                 >  7:204038/1‑149 (MQ=255)                                                                                      ctttcgaggctggagcgtggcgagccgataccgacgatggtacggccgcgtagcaggtcggcgCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGccc                                                                 <  1:308911‑M2/86‑1 (MQ=255)                                                                                         gTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGCCCGTg                                                              <  8:204038/149‑1 (MQ=255)                                                                                           aTCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTG‑TCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGCCCGTGc                                                             <  8:129985/148‑1 (MQ=255)                                                                                           aTCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGCCCGTGcc                                                            >  7:175800/1‑149 (MQ=255)                                                                                              ggCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGCCCGTGCCGAc                                                         >  8:71638/1‑149 (MQ=255)                                                                                               gCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGCCCGTGCCGAcc                                                        >  8:131979/1‑149 (MQ=255)                                                                                                            cAGCCTCGAAAGCAACTACGGCCTGCGTGANCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGCCCGTGCCGACCCTGCGCGACATc                                            >  1:30681/1‑148 (MQ=255)                                                                                                                  cGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGaacaa                                                                              >  7:101820/1‑108 (MQ=255)                                                                                                                  cGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGaacaa                                                                              <  8:101820/108‑1 (MQ=255)                                                                                                                    aaaGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGCCCGTGCCGACCCTGCGCGACATCGAAGACCac                                   >  7:83100/1‑149 (MQ=255)                                                                                                                         aaCTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGCCCGTGCCGACCCTGCGCGACATCGAAGACCACGACGc                              >  5:165575/1‑149 (MQ=255)                                                                                                                              cGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGCCCGTGCCGACCCTGCGCGACATCGAAGACCACGACGCCgtgt                         >  1:46808/1‑149 (MQ=255)                                                                                                                                gCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGCCCGTGCCGACCCTGCGCGACATCGAAGACCACGACGCCGTGTTc                       <  6:165575/149‑1 (MQ=255)                                                                                                                                 ccTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGCCCGTGCCGACCCTGCGCGACATCGAAGACCACGACGCCGTGTTCg                      >  1:312803/1‑149 (MQ=255)                                                                                                                                  cTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTGTGCGAACTGGCCCGCGTACGCCTGGCCCTGACCGTGCTGAACAACAGCCCGCTGCCCGTGCCGACCCTCCGCGACATCGAAGACCACGACGCCGTGTTCg                      >  1:85234/1‑149 (MQ=255)                                                                                                                                   tGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGCCCGTGCCGACCCTGCGCGACATCGAAGACCACGACGCCGTGTTCGTg                    >  6:78848/1‑149 (MQ=255)                                                                                                                                     cGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGCCCGTGCCGCCCCTGCGCGACATCGAAGACCACGACGCCGTGTTAGTGc                   >  4:242206/1‑148 (MQ=255)                                                                                                                                             ggtcggcgCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGCCCGTGCCGACCCTGCGCGACATCGAAGACCACGACGCCGTGTTCGTGCTCGGTGAAg          <  3:199317‑M2/141‑1 (MQ=255)                                                                                                                                              gtcggcgCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGCCCGTGCCGACCCTGCGCGACATCGAAGACCACGACGCCGTGTTCGTGCTCGGTGAAGa         >  4:306528‑M2/8‑149 (MQ=255)                                                                                                                                               tcggcgCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGCCCGTGCCGACCCTGCGCGACATCGaa                                         >  4:315975‑M2/7‑116 (MQ=255)                                                                                                                                               tcggcgCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGCCCGTGCCGACCCTGCGCGACATCGaa                                         <  3:315975‑M2/110‑1 (MQ=255)                                                                                                                                                 ggcgCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGCCCGTGCCGACCCTGCGCGACATCGAAGACCACGACGCCGTGTTCGTGCTCGGTGAAGAcc       <  3:249601‑M2/144‑1 (MQ=255)                                                                                                                                                     ccGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGCCCGTGCCGACCCTGCGCGACATCGAAGACCACGACGCCGTGTTCGTGCTCGGTGAAGACCTGAcc  <  3:306528/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                      CAGCCACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTG‑GCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGCCCGTGCCGACCCTGCGCGACATCGAAGACCACGACGCCGTGTTCGTGCTCGGTGAAGACCTGACC  >  NC_002947/4661977‑4662273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.