New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4748455 =	36 (0.650)	3 (0.060)	3/244	NT	8.3%	coding (159/1683 nt)	PP_4203	ubiquinone oxidoreductase electron transfer flavoprotein
	?	NC_002947	4748523 =	32 (0.610)					coding (227/1683 nt)	PP_4203	ubiquinone oxidoreductase electron transfer flavoprotein

AACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACC  >  NC_002947/4748310‑4748602                                                                                                                                                  |                                                                                                                                                    aaCCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTc                                                                                                                                                  >  8:284141/1‑149 (MQ=255) aaCCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTc                                                                                                                                                  >  6:248642/1‑149 (MQ=255)   cagcgagatgatgtagttgccatggttgtgcatggtcttgggcacgaacaggtcaggcaccttggtcgcgctgccggcatccttgagtacgtagatgtcgtcgcgcttcacttcggtgttcagcggtgcaccgagctctttccAGTCgg                                                                                                                                                >  6:284454‑M1/144‑149 (MQ=255)         gAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCca                                                                                                                                          <  3:30431/149‑1 (MQ=255)               gAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGCCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGCTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCct                                                                                                                                    >  6:97435/1‑149 (MQ=255)                aaTACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCct                                                                                                                                    >  8:143234/1‑148 (MQ=255)                 aTACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCctct                                                                                                                                  <  5:39567/149‑1 (MQ=255)                     aTGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGGAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTgg                                                                                                                              >  6:174208/1‑149 (MQ=255)                      tGGAATTCGACGTGGTCATCGTCGGCGCCTTCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTgta                                                                                                                             >  1:21943/1‑147 (MQ=255)                      tGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGAGGGCCTGTCCTCCGCCTGCCGCCTGAAGCAGAAGGCCTCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGTCTCTGAAGTCGGCGCCCACATCCTCTCTg                                                                                                                               <  2:21943/147‑1 (MQ=255)                        gAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGgcg                                                                                                                            <  4:323810/148‑1 (MQ=255)                              gACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGtt                                                                                                                     >  4:27789/1‑149 (MQ=255)                               aCGTGGGCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGGCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTc                                                                                                                    <  4:316481/149‑1 (MQ=255)                                cGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCg                                                                                                                   <  5:97435/149‑1 (MQ=255)                                cGTGGTCATCGTCGGCGCCGGCCCGGAGGGCCTGTCCGCCGCCTGCAGTCTGAAGCAGAATGCCGCCGAAGACGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTc                                                                                                                    <  8:158071/148‑1 (MQ=255)                                    gTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGc                                                                                                                <  2:337960/148‑1 (MQ=255)                                    gTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGc                                                                                                                <  2:9152/148‑1 (MQ=255)                                     tCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGccc                                                                                                              <  7:143234/149‑1 (MQ=255)                                        tcgtcgGCGCCGGCCCGGCGGGCCTGTCCGCCGCCGGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCGGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATACAATCTGGCGCAGTGTTCGAGACCcgc                                                                                                           >  6:286445/1‑149 (MQ=255)                                           ggcacgaacaggtcaggcaccttggtcgcgctgccggcatccttgagtacgtagatgtcgtcgcgcttcacttcggtgttcagcggtgcaccgagctctttccAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGcc                                                                                                        <  6:239826‑M1/46‑1 (MQ=255)                                                   ggcccggcGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGa                                                                                                <  2:273744/149‑1 (MQ=255)                                                       cggcggGCCTGTCCTCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTg                                                                                            <  7:256275/149‑1 (MQ=255)                                                                tGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGAc                                                                                   >  2:232326/1‑149 (MQ=255)                                                                 gTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCCCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACt                                                                                  >  5:262556/1‑149 (MQ=255)                                                                  tCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACt                                                                                  <  5:248642/148‑1 (MQ=255)                                                                      gcgctgccggcatccttgagtacgtagatgtcgtcgcgcttcacttcggtgttcagcggtgcaccgagctctttccAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGaaa                                                                             >  5:239826‑M1/77‑149 (MQ=255)                                                                      ccgcctgccgcctgAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGaaa                                                                             <  7:284141/149‑1 (MQ=255)                                                                         ctggcggcatccttgagtacgtagatgtcgtcgcgcttcacttcggtgttcagcggtgcaccgagctctttccAGTCGGCGCCCACATCCTCTCTGTCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAagag                                                                          >  1:174440‑M1/74‑149 (MQ=255)                                                                                  tgAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGccc                                                                                                       >  7:242625/1‑111 (MQ=255)                                                                                  tgAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGccc                                                                                                       <  8:242625/111‑1 (MQ=255)                                                                                   gAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGAc                                                                                   <  8:67211/130‑1 (MQ=255)                                                                                      gCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCAACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGc                                                             >  4:317758/1‑149 (MQ=255)                                                                                           aGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAac                                                        <  7:83436/149‑1 (MQ=255)                                                                                                gccgAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTGCCCCGACTGGAAAGCGCTCAGTGCCCCGCTGCACACCg                                                    >  6:253451/1‑148 (MQ=255)                                                                                                 ccgAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGaa                                                  <  4:149362/149‑1 (MQ=255)                                                                                                 ccgAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGaa                                                  <  3:317758/149‑1 (MQ=255)                                                                                                 ccgAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTAAACACCGaa                                                  <  3:27789/149‑1 (MQ=255)                                                                                                      gCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCGACATCCTCTCTGGCGCATTGTTCGAGGCCCGAGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGaa                                             <  1:65570/149‑1 (MQ=255)                                                                                                          gTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGAGCAGTGTTAGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCTGTGCACCGCTGAAAACCGAAGTGAAgcgc                                         >  8:60386/1‑149 (MQ=255)                                                                                                             gCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGcaac                                      <  5:174208/149‑1 (MQ=255)                                                                                                               gAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTACCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGcgacg                                     >  3:302207/1‑148 (MQ=255)                                                                                                                      gCGTCTGCGTGGTGGAGAAAGGCTATGAAGTCGGCGACCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTAc                             <  8:157750/149‑1 (MQ=255)                                                                                                                                             tctGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGt                                                                    >  1:167835/1‑87 (MQ=255)                                                                                                                                             tctGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGt                                                                    <  2:167835/87‑1 (MQ=255)                                                                                                                                               tGAAGTCGGCGCCCGCACCCTCTCTGGCGCAGTGTTCGAGCCTCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGa    >  7:305444/1‑149 (MQ=255)                                                                                                                                               tGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGcgcg     >  2:130578/1‑148 (MQ=255)                                                                                                                                                 aaGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGcgcg     <  1:130578/146‑1 (MQ=255)                                                                                                                                                 aaGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGAc   >  4:171919/1‑148 (MQ=255)                                                                                                                                                  AGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGAcc  <  6:324855‑M1/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    AACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACC  >  NC_002947/4748310‑4748602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.