New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4748455 =	36 (0.650)	3 (0.060)	3/244	NT	8.3%	coding (159/1683 nt)	PP_4203	ubiquinone oxidoreductase electron transfer flavoprotein
	?	NC_002947	4748523 =	32 (0.610)					coding (227/1683 nt)	PP_4203	ubiquinone oxidoreductase electron transfer flavoprotein

CCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGCCCAAGACCATGCACAACCATGGCAACTACATCATCTCGCTG  >  NC_002947/4748379‑4748665                                                                                                                                                 |                                                                                                                                               gcgctgccggcatccttgagtacgtagatgtcgtcgcgcttcacttcggtgttcagcggtgcaccgagctctttccAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGaaa                                                                                                                                            >  5:239826‑M1/77‑149 (MQ=255) ccgcctgccgcctgAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGaaa                                                                                                                                            <  7:284141/149‑1 (MQ=255)    ctggcggcatccttgagtacgtagatgtcgtcgcgcttcacttcggtgttcagcggtgcaccgagctctttccAGTCGGCGCCCACATCCTCTCTGTCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAagag                                                                                                                                         >  1:174440‑M1/74‑149 (MQ=255)                 gCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCAACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGc                                                                                                                            >  4:317758/1‑149 (MQ=255)                      aGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAac                                                                                                                       <  7:83436/149‑1 (MQ=255)                           gccgAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTGCCCCGACTGGAAAGCGCTCAGTGCCCCGCTGCACACCg                                                                                                                   >  6:253451/1‑148 (MQ=255)                            ccgAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGaa                                                                                                                 <  3:317758/149‑1 (MQ=255)                            ccgAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGaa                                                                                                                 <  4:149362/149‑1 (MQ=255)                            ccgAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTAAACACCGaa                                                                                                                 <  3:27789/149‑1 (MQ=255)                                 gCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCGACATCCTCTCTGGCGCATTGTTCGAGGCCCGAGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGaa                                                                                                            <  1:65570/149‑1 (MQ=255)                                     gTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGAGCAGTGTTAGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCTGTGCACCGCTGAAAACCGAAGTGAAgcgc                                                                                                        >  8:60386/1‑149 (MQ=255)                                        gCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGcaac                                                                                                     <  5:174208/149‑1 (MQ=255)                                          gAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTACCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGcgacg                                                                                                    >  3:302207/1‑148 (MQ=255)                                                 gCGTCTGCGTGGTGGAGAAAGGCTATGAAGTCGGCGACCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTAc                                                                                            <  8:157750/149‑1 (MQ=255)                                                                     ctctttccagtcggggaacagctcgttcagggcgcggggctcgaacactgcgacagagaggatgtgggcgccgactGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGCCAg                                                                        >  1:174440‑M2/77‑149 (MQ=255)                                                                        tttccagtcggggaacagctcgttcagggcgcggggctcgaacactgcgccagagaggatgtgggcgccgactGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAgcgc                                                                     >  5:239826‑M2/74‑149 (MQ=255)                                                                        tctGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGt                                                                                                                                   >  1:167835/1‑87 (MQ=255)                                                                        tctGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGt                                                                                                                                   <  2:167835/87‑1 (MQ=255)                                                                          tGAAGTCGGCGCCCGCACCCTCTCTGGCGCAGTGTTCGAGCCTCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGa                                                                   >  7:305444/1‑149 (MQ=255)                                                                          tGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGcgcg                                                                    >  2:130578/1‑148 (MQ=255)                                                                            aaGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGcgcg                                                                    <  1:130578/146‑1 (MQ=255)                                                                            aaGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGAc                                                                  >  4:171919/1‑148 (MQ=255)                                                                             AGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGAcc                                                                 <  6:324855‑M1/148‑1 (MQ=255)                                                                              GTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGAcc                                                                 <  5:67864‑M1/147‑1 (MQ=255)                                                                               TCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAg                                                              <  6:19758‑M1/149‑1 (MQ=255)                                                                                 GGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTTCGTACTCAAGGATGCCGGCAGCGCGACCaa                                                               >  8:166966‑M1/1‑146 (MQ=255)                                                                                 GGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTTCGTACTCAAGGATGCCGGCAGCGCGACCaa                                                               <  7:166966‑M1/146‑1 (MQ=255)                                                                                  GCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTg                                                           <  7:131540‑M1/149‑1 (MQ=255)                                                                                   cgcCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGc                                                          <  3:171919/149‑1 (MQ=255)                                                                                      ccACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGc                                                                              >  6:149322/1‑126 (MQ=255)                                                                                      ccACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGc                                                                              <  5:149322/126‑1 (MQ=255)                                                                                        acaTCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGAc                                                     <  5:253451/149‑1 (MQ=255)                                                                                             ctctctGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGt                                                 <  5:324855/148‑1 (MQ=255)                                                                                                tctGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGTTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTc                                               <  7:60386/147‑1 (MQ=255)                                                                                                  tGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGt                                             <  5:286445/147‑1 (MQ=255)                                                                                                   ggcgcggggctcgaacactgcgccagagaggatgtgggcgccgactGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGcc                                          <  6:239826‑M2/103‑1 (MQ=255)                                                                                                    gcgcAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTg                                            <  1:232326/146‑1 (MQ=255)                                                                                                      gcAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGCCCaa                                       <  4:302207/149‑1 (MQ=255)                                                                                                                      gcgcCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGCCCAAGACCATGCACAACCAt                       <  8:131540/149‑1 (MQ=255)                                                                                                                       cgcCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGCCCAAGACCATGCACAACCATg                      <  5:19758/149‑1 (MQ=255)                                                                                                                       cgcCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGCCCAAGACCATGCACAACCATg                      <  6:262556/149‑1 (MQ=255)                                                                                                                         cccTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGt                                                            >  4:149322/1‑109 (MQ=255)                                                                                                                         cccTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGt                                                            <  3:149322/109‑1 (MQ=255)                                                                                                                              aaCGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGCCCAAGACCATGCACAACCATGGCAACTa               >  6:265122/1‑149 (MQ=255)                                                                                                                                           ccgactGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGCCCAAGACCATGCACAACCATGGCAACTACATCATCTCGCTg  >  6:284454‑M2/7‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                               CCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGCCCAAGACCATGCACAACCATGGCAACTACATCATCTCGCTG  >  NC_002947/4748379‑4748665

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.