New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4847141 =	48 (0.870)	3 (0.060)	3/244	NT	6.3%	coding (1891/2475 nt)	PP_4261	cation‑transporting P‑type ATPase
	?	NC_002947	4847177 =	43 (0.810)					coding (1927/2475 nt)	PP_4261	cation‑transporting P‑type ATPase

GCGCATTGGTCAGGCTACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGATGGTTGCCGAAGTGGCCGCGCAGCTGGGTATCGACCAGGCCATTGGCGGCCTGCGCCCGGATGACAAA  >  NC_002947/4846996‑4847281                                                                                                                                                  |                                                                                                                                             gcgcATTGGTCAGGCTACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGccc                                                                                                                                           >  6:138573/1‑149 (MQ=255) ccttgcgcccgtcagcctgcagggctttcaggcggtccagtttgtcatccgggcgcaggccgccaatggcctggtcgatacccagctgcgcggccacttcggcaaccatcggcgagctgtcgcccgacagcagcagggtgtgccaGccc                                                                                                                                           >  4:208679‑M1/146‑149 (MQ=255)  cgcATTGGTCGGGCTACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGcccc                                                                                                                                          <  6:25968/149‑1 (MQ=255)   ttgcgcccgtcagcctgcagggctttcaggcggtccagtttgtcatccgggcgcaggccgccaatggcctggtcgatacccagctgcgcggccacttcggcaaccatcggcgagctgtcgcccgacagcagcagggtgtgccaGCCCCg                                                                                                                                         <  6:184041‑M1/6‑1 (MQ=255)    cATTGCTCCGCCTCCCTTCGTCTGCGCCTTGAGTCGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCgg                                                                                                                                        <  8:171405/149‑1 (MQ=255)            aGGCTACCTTCGTCTGCGCCTGGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTc                                                                                                                                <  5:240164/149‑1 (MQ=255)                  ccTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGctgc                                                                                                                           <  5:138573/148‑1 (MQ=255)                       gTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCaa                                                                                                                     <  6:153775/149‑1 (MQ=255)                            cgcCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGgcgc                                                                                                                <  3:144593/149‑1 (MQ=255)                                ttGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCACGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCgggg                                                                                                            >  3:250671/1‑149 (MQ=255)                                  ggtccagtttggcatccgggcgcaggccgccactggcctggtcgatacccagctgcgcggccacttcggcaaccatcggcgagctgtcgcccgacagcagcagggtgtgccaGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCt                                                                                                          >  8:292491‑M1/113‑149 (MQ=255)                                    gtggtgCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTgg                                                                                                        <  1:135451/149‑1 (MQ=255)                                    gtggtgCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTgg                                                                                                        <  3:195180/149‑1 (MQ=255)                                          cGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACAcc                                                                                                  <  1:208047/149‑1 (MQ=255)                                           ggAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACAccc                                                                                                 >  5:213534/1‑149 (MQ=255)                                           ggAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACAccc                                                                                                 <  3:318424/149‑1 (MQ=255)                                            gAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCct                                                                                                >  3:202591/1‑149 (MQ=255)                                               aTCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCctgct                                                                                             <  5:166904/149‑1 (MQ=255)                                                  cccGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCctgctgct                                                                                          >  5:184041/1‑149 (MQ=255)                                                   ccGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCctgctgctg                                                                                         >  5:293499/1‑149 (MQ=255)                                                      cTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCg                                                                                      <  8:298035/149‑1 (MQ=255)                                                        gTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGcac                                                                                                     >  2:306722/1‑132 (MQ=255)                                                         tACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGc                                                                                   <  1:2540/149‑1 (MQ=255)                                                           cccGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTgg                                                                                                        <  4:12449/126‑1 (MQ=255)                                                           cccGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTgg                                                                                                        >  3:12449/1‑126 (MQ=255)                                                           cccGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGa                                                                                 <  4:190874/149‑1 (MQ=255)                                                            ccGAGCCGCACGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGAc                                                                                <  4:250671/149‑1 (MQ=255)                                                             cgccaatggcctggtcgatacccagctgcgcggccacttcggcaaccatcggcgagctgtcgcccgacagcagcagggtgtgccaGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGc                                                                                                           >  4:224508‑M1/86‑121 (MQ=255)                                                             cgccaatggcctggtcgatacccagctgcgcggccacttcggcaaccatcggcgagctgtcgcccgacagcagcagggtgtgccaGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGc                                                                                                           <  3:224508‑M1/36‑1 (MQ=255)                                                             cGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACa                                                                               <  6:293499/149‑1 (MQ=255)                                                              gAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAg                                                                              >  2:86663/1‑149 (MQ=255)                                                                cgaaccaggCCAGTGGCCCCTGGCGGTCGCCCAGCAGCAGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGa                                                                                 >  7:196617/8‑144 (MQ=25)                                                                cgaaccaggCCAGTGGCCCCTGGCGGTCGCCCAGCAGCAGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGa                                                                                 <  8:196617/137‑1 (MQ=25)                                                                      cgGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGa                                                                      <  6:213534/149‑1 (MQ=255)                                                                        gCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGATg                                                                    <  4:12081/149‑1 (MQ=255)                                                                        gCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGATg                                                                    <  3:104101/149‑1 (MQ=255)                                                                             tGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGATGGTTGc                                                               >  5:276661/1‑149 (MQ=255)                                                                                   ctgctgGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGATGGTTGCCGaa                                                           <  7:166500/147‑1 (MQ=255)                                                                                        gggCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGATGGTTGCCGAAGTgg                                                       <  8:168740/146‑1 (MQ=255)                                                                                        gggCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGATGGTTGCCGAAGTgg                                                       >  7:168740/1‑146 (MQ=255)                                                                                            gACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGATGGTTGCCGAAGTGGCcgcg                                                  >  5:284005/1‑147 (MQ=255)                                                                                               cGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGATGGTTGCCGAAGTGGCCGCGCAGCt                                             >  5:12778/1‑149 (MQ=255)                                                                                                              gCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGATGGTTGCCGAAGTGGCCGCGCAGCTGGGTATCGACCAgg                               <  8:295233/148‑1 (MQ=255)                                                                                                               ccTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGATGGTTGCCGAAGTGGCCGCGCAGCTGGGTATCGACCAGGc                              >  5:252178/1‑148 (MQ=255)                                                                                                                 tGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGATGGTTGCCGAAGTGGCCGCGCAGCTGGGTATCGACCAGGccgc                           >  5:78700/1‑147 (MQ=255)                                                                                                                  ggTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGATGGTTGCCGAAGTGGCCGCGCAGCTGGGTATCGACCAGGCCAtt                          >  2:56579/1‑149 (MQ=255)                                                                                                                   gTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGATGGTTGCCGAAGTGGCCGCGCAGCTGGGTATc                                      <  5:199942/136‑1 (MQ=255)                                                                                                                   gTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGATGGTTGCCGAAGTGGCCGCGCAGCTGGGTATc                                      >  6:199942/1‑136 (MQ=255)                                                                                                                   gTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGATGGTTGCCGAAGTGGCCGCGCAGCTGGGTATCGACCAGGCCATTg                         >  6:156143/1‑149 (MQ=255)                                                                                                                       ggCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGATGGTTGCCGAAGTGGCCGCGCAGCTGGGTATCGACCAGGCCATTggcg                      <  4:202591/148‑1 (MQ=255)                                                                                                                         ccTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGATGGTTGCCGAAGTGGCCGCGCAGCTGGGTATCGACCAGGCCATTGGCGGcc                   >  6:180152/1‑149 (MQ=255)                                                                                                                               tGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTgg                                                                                                        <  1:294302/58‑1 (MQ=255)                                                                                                                               tGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTgg                                                                                                        >  2:294302/1‑58 (MQ=255)                                                                                                                                         cgcgACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGATGGTTGCCGAAGTGGCCGCGCAGCTGGGTATCGACCAGGCCATTGGCGGCCTGCGCCCGGATGAc     <  1:86663/147‑1 (MQ=255)                                                                                                                                          gcgACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCTGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGATGGTTGCCGAAGTGGCCGCGCAGCTGGGTATCGACCAGGCCATTGGCGGCCTGCGCCCGGATGACaaa  >  7:114271/1‑149 (MQ=255)                                                                                                                                                  GCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGATGGTTGCCGAAGTGGCCGCGCAGCTGGGTATCGACCAGGCCATTg                         >  8:164592‑M1/1‑118 (MQ=255)                                                                                                                                                  GCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGATGGTTGCCGAAGTGGCCGCGCAGCTGGGTATCGACCAGGCCATTg                         <  7:164592‑M1/118‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                             GCGCATTGGTCAGGCTACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGATGGTTGCCGAAGTGGCCGCGCAGCTGGGTATCGACCAGGCCATTGGCGGCCTGCGCCCGGATGACAAA  >  NC_002947/4846996‑4847281

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.