| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4889595 | 27 (0.490) | 4 (0.090) | 4/202 | NT | 14.5% | intergenic (+41/‑112) | hyi/glxR | hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase |
| ? | NC_002947 | = 4889632 | 26 (0.600) | intergenic (+78/‑75) | hyi/glxR | hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase | |||||
GAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGG > NC_002947/4889447‑4889743 | gAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGATGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAA < 2:38360‑M1/149‑1 (MQ=255)gAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAA > 2:208038‑M1/1‑149 (MQ=255) gACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACACGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGc < 4:12910/147‑1 (MQ=255) cATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCg > 4:29346/1‑149 (MQ=255) ggCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTg < 3:300519/148‑1 (MQ=255) ggCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTg < 2:88504/148‑1 (MQ=255) gggCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCAcc < 3:29346/149‑1 (MQ=255) gggCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGAGAACACCGGCAAAGCCGGTGCCATCCAcc < 1:208038/149‑1 (MQ=255) ggCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCt < 4:131545/148‑1 (MQ=255) gcgGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCtt < 4:339098‑M2/149‑3 (MQ=255) gTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCttcgcgg < 6:35348‑M2/149‑8 (MQ=255) tACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCttcgcggg > 5:35348‑M2/1‑141 (MQ=255) cAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCttcgcgggc > 3:339098‑M2/1‑139 (MQ=255) ccGCTGACCACCACCGAAGCGGGCCCGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGCACACCCGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCttcgcgggcgagcc < 2:38198‑M2/149‑15 (MQ=255) caccaccGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCttcgcgggcgagcccgctccca < 7:59716‑M2/149‑23 (MQ=255) ccaccGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCg < 7:49670/102‑1 (MQ=255) ccaccGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCg > 8:49670/1‑102 (MQ=255) cGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAgggg < 8:59716/149‑1 (MQ=255) aaGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAAgcagacaactcggtggatggcaccggctttgccggtgttcgcgggcgagc > 8:41010‑M1/1‑82 (MQ=255) aaGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAAgcagacaactcggtggatggcaccggctttgccggtgttcgcgggcgagc < 7:41010‑M1/132‑51 (MQ=255) gCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACATCTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGCACACCGCCAAAGCCCGTGCCATCCCCCGAGTTGTCAGCTTAGCGGGGGCGGCCGCTCCCCCAGGGGG‑CCaaacc > 6:18356/1‑147 (MQ=37) cTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTATGCTTAGCGGGCGAGCCCCCACCCACAGGGGG‑CCAAAgcat > 5:4669/1‑147 (MQ=255) ctggctgAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAgcttgggcg > 1:127786/1‑145 (MQ=255) gctgAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTgag < 8:333098/148‑1 (MQ=255) gctgAAAACCCACAACCCAATCTTAGTAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCTAACACCGGCAAAGCGGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTgaga < 6:4669/149‑1 (MQ=255) tgAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGCACACCGGCAAAGCCGGTGCCCTCCACCGAGTTGTCTGCTTCGCGGGCGCGCCCGCTCCCCCAGGGGG‑CCAAAGCGTGCTTGAGgta > 2:192289/1‑149 (MQ=37) tgAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGc > 4:99101/1‑71 (MQ=255) tgAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGc < 3:99101/71‑1 (MQ=255) tgAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTAGCGGGCGCGCCCGCTCCCACAGGGGG‑CCAAAGCGTGCTTgagct > 4:114482/1‑146 (MQ=255) gAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAAgcagacaactcggtggatggcaccggctttgccggtgttcgcgggc < 2:43288‑M1/109‑47 (MQ=255) gAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAAgcagacaactcggtggatggcaccggctttgccggtgttcgcgggc > 1:43288‑M1/1‑63 (MQ=255) aaaCCCACAACGCAATCTGAGGAACAACTCGGCACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTGAGATATca < 3:114482/149‑1 (MQ=255) gCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAAAACCGGCAAAGCCGGTGCCATCCAACGTGTTTTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCCAAAGCTTGCTTGAGATATCACAATTACaaa < 1:38198/149‑1 (MQ=37) acaacTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCCGGCGAGCCCGCTCCCCCAGGGGG‑CCAAAGCTTGCGTGAGATATCACAATTACAAAGAGGGAATTtcg > 8:57283/1‑147 (MQ=255) gACCCTGTGGTAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTaaa < 5:18356/149‑1 (MQ=255) tgGGAGCGGGCTCGCCCGCGAAgcagacaactcggtggatggcaccggctttgccggtgttcgcgggcgagcccgctcccacagggtcccgagttgttcctcagattgcgttgtgggttttcagccagcccaggcccgcttcggtggtg < 7:59716‑M1/149‑128 (MQ=255) gAGCGGGCTCGCCCGCGAAgcagacaactcggtggatggcaccggctttgccg > 6:133818‑M1/1‑19 (MQ=255) gAGCGGGCTCGCCCGCGAAgcagacaactcggtggatggcaccggctttgccg < 5:133818‑M1/53‑35 (MQ=255) gggCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTAGCGGGCGAGCCCCCGCCCACAGGGGG‑CCAAAGCGTGCGTTAGATATAACAATTACAAAGAGGTTATTTGTCATGGCTAAAAACGGTTTGATCgg > 2:356978/1‑149 (MQ=37) ggCTCGCCCGCGAAgcagacaactcggtggatggcaccggctttgcgggtgtgcgcgggcgagcccgctcccacagggtcccgagttgttcctcagattgcgttgtgggttttcagccagcccgggcccgcttcggtggtggtcagcgg < 2:38198‑M1/149‑136 (MQ=255) gCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCttcgcgggcgagcccgctcccacagggtcccgagttgttcctcagattgcgttgtgggttttcagccagcccaggcccgctt > 8:41010‑M2/1‑50 (MQ=255) gCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCttcgcgggcgagcccgctcccacagggtcccgagttgttcctcagattgcgttgtgggttttcagccagcccaggcccgctt < 7:41010‑M2/132‑83 (MQ=255) gCCCGCGAAgcagacaactcggtggatggcaccggctttgccggtgttcgcgggcgagcccgctcccacagggtcccgagttgttcctcagattgcgttgtgggttttcagccagcccaggcccgcttcggtggtggtcagcggcttg > 3:339098‑M1/1‑9 (MQ=255) gCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCttcgcgggcgagcccgctcccacagggtcccgagttgttcctcagattgcgttgtgggttttc < 2:43288‑M2/109‑64 (MQ=255) gCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCttcgcgggcgagcccgctcccacagggtcccgagttgttcctcagattgcgttgtgggttttc > 1:43288‑M2/1‑46 (MQ=255) cccGCGAAgcagacaactcggtggatggcaccggctttgccggtgttcgcgggcgagcccgctcccacagggtcccgagttgttcctcagattgcgttgtgggttttcagccagcccaggcccgcttcggtggtggtcagcggcttgta > 5:35348‑M1/1‑8 (MQ=255) ccGCGAAgcagacaactcggtggatggcaccggctttgccggtgttcgcgggcgagcccgctcccacagggtcccgagttgttcctcagattgcgttgtgggttttcagccagcccaggcccgcttcggtggtggtcagcggcttgtac < 6:35348‑M1/149‑143 (MQ=255) ccGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCAt > 5:188256/1‑138 (MQ=255) ccGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCAt < 6:188256/138‑1 (MQ=255) ccGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGca > 5:284394/1‑149 (MQ=255) aagcagacaactcggtggatggcaccggctttgccggtgttcgcgggcgagcccgctcccacagggtcccgagttgttcctcagattgcgttgtgggttttcagccagcccaggcccgcttcggtggtggtcagcggcttgtactccgc < 4:339098‑M1/149‑148 (MQ=255) acacCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATgg > 6:274030/1‑149 (MQ=255) | GAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGG > NC_002947/4889447‑4889743 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |