New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4889595	27 (0.490)	4 (0.090)	4/202	NT	14.5%	intergenic (+41/‑112)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
	?	NC_002947	= 4889632	26 (0.600)					intergenic (+78/‑75)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase

GCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCA  >  NC_002947/4889486‑4889780                                                                                                                                                   |                                                                                                                                                      gcgGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCtt                                                                                                                                                     <  4:339098‑M2/149‑3 (MQ=255)      gTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCttcgcgg                                                                                                                                                <  6:35348‑M2/149‑8 (MQ=255)       tACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCttcgcggg                                                                                                                                               >  5:35348‑M2/1‑141 (MQ=255)         cAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCttcgcgggc                                                                                                                                              >  3:339098‑M2/1‑139 (MQ=255)             ccGCTGACCACCACCGAAGCGGGCCCGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGCACACCCGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCttcgcgggcgagcc                                                                                                                                         <  2:38198‑M2/149‑15 (MQ=255)                     caccaccGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCttcgcgggcgagcccgctccca                                                                                                                                 <  7:59716‑M2/149‑23 (MQ=255)                           cGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAgggg                                                                                                                           <  8:59716/149‑1 (MQ=255)                                   gCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACATCTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGCACACCGCCAAAGCCCGTGCCATCCCCCGAGTTGTCAGCTTAGCGGGGGCGGCCGCTCCCCCAGGGGG‑CCaaacc                                                                                                                  >  6:18356/1‑147 (MQ=37)                                     cTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTATGCTTAGCGGGCGAGCCCCCACCCACAGGGGG‑CCAAAgcat                                                                                                                >  5:4669/1‑147 (MQ=255)                                          ctggctgAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAgcttgggcg                                                                                                           >  1:127786/1‑145 (MQ=255)                                             gctgAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTgag                                                                                                         <  8:333098/148‑1 (MQ=255)                                             gctgAAAACCCACAACCCAATCTTAGTAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCTAACACCGGCAAAGCGGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTgaga                                                                                                        <  6:4669/149‑1 (MQ=255)                                               tgAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGCACACCGGCAAAGCCGGTGCCCTCCACCGAGTTGTCTGCTTCGCGGGCGCGCCCGCTCCCCCAGGGGG‑CCAAAGCGTGCTTGAGgta                                                                                                      >  2:192289/1‑149 (MQ=37)                                               tgAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTAGCGGGCGCGCCCGCTCCCACAGGGGG‑CCAAAGCGTGCTTgagct                                                                                                       >  4:114482/1‑146 (MQ=255)                                                  aaaCCCACAACGCAATCTGAGGAACAACTCGGCACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTGAGATATca                                                                                                   <  3:114482/149‑1 (MQ=255)                                                             gCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAAAACCGGCAAAGCCGGTGCCATCCAACGTGTTTTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCCAAAGCTTGCTTGAGATATCACAATTACaaa                                                                                         <  1:38198/149‑1 (MQ=37)                                                                         acaacTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCCGGCGAGCCCGCTCCCCCAGGGGG‑CCAAAGCTTGCGTGAGATATCACAATTACAAAGAGGGAATTtcg                                                                             >  8:57283/1‑147 (MQ=255)                                                                                  gACCCTGTGGTAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTaaa                                                                   <  5:18356/149‑1 (MQ=255)                                                                                                gggCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTAGCGGGCGAGCCCCCGCCCACAGGGGG‑CCAAAGCGTGCGTTAGATATAACAATTACAAAGAGGTTATTTGTCATGGCTAAAAACGGTTTGATCgg                                                     >  2:356978/1‑149 (MQ=37)                                                                                                  gCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCttcgcgggcgagcccgctcccacagggtcccgagttgttcctcagattgcgttgtgggttttcagccagcccaggcccgctt                                                                     >  8:41010‑M2/1‑50 (MQ=255)                                                                                                  gCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCttcgcgggcgagcccgctcccacagggtcccgagttgttcctcagattgcgttgtgggttttcagccagcccaggcccgctt                                                                     <  7:41010‑M2/132‑83 (MQ=255)                                                                                                      gCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCttcgcgggcgagcccgctcccacagggtcccgagttgttcctcagattgcgttgtgggttttc                                                                                        <  2:43288‑M2/109‑64 (MQ=255)                                                                                                      gCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCttcgcgggcgagcccgctcccacagggtcccgagttgttcctcagattgcgttgtgggttttc                                                                                        >  1:43288‑M2/1‑46 (MQ=255)                                                                                                        ccGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCAt                                                        >  5:188256/1‑138 (MQ=255)                                                                                                        ccGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCAt                                                        <  6:188256/138‑1 (MQ=255)                                                                                                        ccGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGca                                             >  5:284394/1‑149 (MQ=255)                                                                                                           atggcacCGGCTTTGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGt                                                             >  1:55738/5‑130 (MQ=255)                                                                                                           atggcacCGGCTTTGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGt                                                             <  2:55738/126‑1 (MQ=39)                                                                                                              acacCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATgg                                       >  6:274030/1‑149 (MQ=255)                                                                                                                acCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATggg                                      >  1:53215/1‑148 (MQ=255)                                                                                                                  cGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCttcgcgggcgagcccgctc                                                                                                                                    >  6:133818‑M2/1‑34 (MQ=255)                                                                                                                  cGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCttcgcgggcgagcccgctc                                                                                                                                    <  5:133818‑M2/53‑20 (MQ=255)                                                                                                                       aaGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGccc                               <  7:31451/148‑1 (MQ=255)                                                                                                                       aaGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGccc                               >  8:31451/1‑148 (MQ=255)                                                                                                                                   tCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATTGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAAcc                  <  2:21072/149‑1 (MQ=255)                                                                                                                                   tCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAAcc                  >  4:75310/1‑149 (MQ=255)                                                                                                                                      aCCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTg                >  6:316119/1‑148 (MQ=255)                                                                                                                                          aGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa           <  3:75310/149‑1 (MQ=255)                                                                                                                                            ttGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAg          <  2:127786/148‑1 (MQ=255)                                                                                                                                                  gCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGt    >  1:278504/1‑148 (MQ=255)                                                                                                                                                   cTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTca  >  4:208289/1‑149 (MQ=255)                                                                                                                                                   cTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTc   <  6:284394/148‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                      GCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGG‑CCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCA  >  NC_002947/4889486‑4889780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.