New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4926807 | 52 (0.940) | 3 (0.060) | 3/246 | NT | 5.7% | coding (1075/1113 nt) | cheBA | chemotaxis response regulator protein‑glutamate methylesterase |
? | NC_002947 | = 4926840 | 49 (0.920) | coding (1042/1113 nt) | cheBA | chemotaxis response regulator protein‑glutamate methylesterase |
AGCCGCCGGGCCATTGACCAGAGCACCGACATGACCGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCAT > NC_002947/4926662‑4926951 | agCCGCCGGGCCATTTCCCAGCGCTCCTACCTGACCGCCGTCTTGGAAGTTGCCAGCGCCAATGGGAACGAAAGCCAGGTTCAGCCCGATCAGGCTGAGGACGTCCTTCAGACGCACGCCTCCAGCAGGTGCGTGGCGATTTCGTCGA‑g < 6:261124/149‑1 (MQ=255) gccgGGCCATTGACCAGAGCACCGACATGACCGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTg > 6:182134/1‑149 (MQ=255) ccgGGCCATTGACCAGAGCACCGACATGACCGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGt < 3:105838/149‑1 (MQ=255) ccATTGACCAGAGCACCGACATGACCGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACg > 4:131413/1‑149 (MQ=255) ttGACCAGAGCACCGACATGACCGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCa > 6:39354/1‑149 (MQ=255) aCCAGAGCACCGACATGACCGCCTTCAAGGAAGTTGCCCCCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATcc > 8:309333/1‑149 (MQ=255) aCCAGAGCACCGACATGACCGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATcc > 4:296612/1‑149 (MQ=255) cAGAGCACCGACATGACCGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGc > 2:273057/1‑149 (MQ=255) agagCACCGACATGACCGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGcc < 5:182134/149‑1 (MQ=255) agCACCGACATGACCGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAg < 1:164077/149‑1 (MQ=255) gACATGACCGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGc < 3:245781/149‑1 (MQ=255) cATGACCGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCt < 4:64304/149‑1 (MQ=255) ccGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTgacg > 3:296612‑M2/1‑145 (MQ=255) ccGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTgac < 3:326903‑M2/148‑4 (MQ=255) cGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGcc > 8:310435/1‑142 (MQ=255) cGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGcc < 7:310435/142‑1 (MQ=255) ccTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCAGCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATg < 2:67851/149‑1 (MQ=255) cAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCaaggcgaacctggcggatgccgtgtacagcctcgacgaaatcg < 1:208220‑M1/148‑44 (MQ=255) aGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATg > 4:144288/1‑149 (MQ=255) gTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCAt < 4:326903/149‑1 (MQ=255) tGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATg < 2:63431/148‑1 (MQ=255) aCCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGACGGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCAt < 1:273057/149‑1 (MQ=255) aCAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCaaggcgaacctggcggatgccgtgtacagcctc < 5:172153‑M1/121‑34 (MQ=255) aCAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCaaggcgaacctggcggatgccgtgtacagcctc > 6:172153‑M1/1‑88 (MQ=255) aTGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACg < 5:39354/149‑1 (MQ=255) tGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACg > 6:235737/1‑148 (MQ=255) aaaGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCAGCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATGCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCt < 6:364590/149‑1 (MQ=255) ccAGGTTCAGACCGATCAGGCTGATGACGTCCATCAGACGCACGGCTCCA‑CAGGTGCTTGCCGATTTCGGCGT‑GGCTGTTCACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATc < 4:264383/149‑1 (MQ=255) ggATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCt < 3:144288/149‑1 (MQ=255) tCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTggg > 3:241457/1‑149 (MQ=255) gACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGAATTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCATGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGcc > 1:314420/1‑148 (MQ=255) gACAGATCAGGCTGATGACGTCCATCAGACGGACGCCTCCACCAGTTGCTTGCAGATTTCGTCGA‑GGGTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGcc < 2:314420/148‑1 (MQ=255) aCCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCca > 7:133469/1‑149 (MQ=255) gATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGc < 2:247288/143‑1 (MQ=255) gATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGc > 1:247288/1‑143 (MQ=255) aGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGtg < 3:131413/149‑1 (MQ=255) tGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACCATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGtgctgc > 2:69936/1‑149 (MQ=255) aGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCa > 7:80683/1‑125 (MQ=255) aGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCa < 8:80683/125‑1 (MQ=255) gcaCGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCAGCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGt > 4:91717/3‑141 (MQ=255) gaaCGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGt < 3:91717/139‑1 (MQ=255) gACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCCCGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGccccc > 6:186951/1‑149 (MQ=255) tCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGa < 8:133469/149‑1 (MQ=255) gACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCa < 4:241457/149‑1 (MQ=255) acgcacgcCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAg > 4:191358/1‑149 (MQ=255) acgcCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTgacga > 7:237427‑M2/1‑64 (MQ=255) acgcCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTgacga < 8:237427‑M2/69‑6 (MQ=255) ccaGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTcg > 5:255992/1‑149 (MQ=255) ttGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTg < 5:218177/119‑1 (MQ=255) ttGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTg > 6:218177/1‑119 (MQ=255) tGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCg > 6:172386/1‑149 (MQ=255) gCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCg < 3:191358/148‑1 (MQ=255) ccGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCcaca < 6:242404/100‑1 (MQ=255) ccGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCcaca > 5:242404/1‑100 (MQ=255) cGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTgacgaaatcggcaagcacctggtggaggcgtgcgtctgatggacgtcctcagcctgatcggtctgatcctggctttcgttgccattgtcggtggcaacttccttg < 1:208220‑M2/148‑106 (MQ=255) gATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGgcgc < 5:235737/149‑1 (MQ=255) aTTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGcc < 3:342684/149‑1 (MQ=255) tttCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGcc > 1:192585/1‑148 (MQ=255) tttCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGcc > 8:136739/1‑148 (MQ=255) tttCGTCGA‑GGCTGTACACGGCATACGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGgcgcgcg > 8:20945/1‑128 (MQ=255) tttCGTCGA‑GGCTGTACACGGCATACGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGgcgcgcg < 7:20945/128‑1 (MQ=255) tCGTCaaggcgaacctggcggatgccgtgtacagcctcgacgaaatcggcaagcacctggtggaggcgt < 8:237427‑M1/69‑65 (MQ=255) tCGTCaaggcgaacctggcggatgccgtgtacagcctcgacgaaatcggcaagcacctggtggaggcgt > 7:237427‑M1/1‑5 (MQ=255) cGTCaaggcgaacctggcggatgccgtgtacagcctcgacgaaatcggcaagcacctggtggaggcgtgcgtctgatggacgtcctcagcctgatcggtctgatcctggctttcgttgccattgtcggtggcaacttccttgaaggcgg > 3:296612‑M1/1‑4 (MQ=255) gTCaaggcgaacctggcggatgccgtgtacagcctcgacgaaatcggcaagcacctggtggaggcgtgcgtctgatggacgtcctcagcctgatcggtctgatcctggctttcgttgccattgtcggtggcaacttccttgaaggcgg < 3:326903‑M1/148‑146 (MQ=255) | AGCCGCCGGGCCATTGACCAGAGCACCGACATGACCGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCAT > NC_002947/4926662‑4926951 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |