New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4926807	52 (0.940)	3 (0.060)	3/246	NT	5.7%	coding (1075/1113 nt)	cheBA	chemotaxis response regulator protein‑glutamate methylesterase
	?	NC_002947	= 4926840	49 (0.920)					coding (1042/1113 nt)	cheBA	chemotaxis response regulator protein‑glutamate methylesterase

CCGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGCCGGTGAGCACCACCGACAACACCTTGTCACCGT  >  NC_002947/4926696‑4926986                                                                                                                                                  |                                                                                                                                                   ccGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTgacg                                                                                                                                                >  3:296612‑M2/1‑145 (MQ=255) ccGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTgac                                                                                                                                                 <  3:326903‑M2/148‑4 (MQ=255)    ccTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCAGCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATg                                                                                                                                             <  2:67851/149‑1 (MQ=255)          aGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATg                                                                                                                                       >  4:144288/1‑149 (MQ=255)               gTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCAt                                                                                                                                  <  4:326903/149‑1 (MQ=255)                 tGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATg                                                                                                                                 <  2:63431/148‑1 (MQ=255)                     aCCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGACGGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCAt                                                                                                                             <  1:273057/149‑1 (MQ=255)                            aTGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACg                                                                                                                     <  5:39354/149‑1 (MQ=255)                             tGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACg                                                                                                                     >  6:235737/1‑148 (MQ=255)                                     aaaGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCAGCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATGCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCt                                                                                                            <  6:364590/149‑1 (MQ=255)                                         ccAGGTTCAGACCGATCAGGCTGATGACGTCCATCAGACGCACGGCTCCA‑CAGGTGCTTGCCGATTTCGGCGT‑GGCTGTTCACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATc                                                                                                       <  4:264383/149‑1 (MQ=255)                                            ggATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCt                                                                                                     <  3:144288/149‑1 (MQ=255)                                               tCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTggg                                                                                                  >  3:241457/1‑149 (MQ=255)                                                  gACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGAATTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCATGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGcc                                                                                                >  1:314420/1‑148 (MQ=255)                                                  gACAGATCAGGCTGATGACGTCCATCAGACGGACGCCTCCACCAGTTGCTTGCAGATTTCGTCGA‑GGGTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGcc                                                                                                <  2:314420/148‑1 (MQ=255)                                                   aCCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCca                                                                                              >  7:133469/1‑149 (MQ=255)                                                      gATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGc                                                                                                 <  2:247288/143‑1 (MQ=255)                                                      gATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGc                                                                                                 >  1:247288/1‑143 (MQ=255)                                                          aGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGtg                                                                                       <  3:131413/149‑1 (MQ=255)                                                              tGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACCATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGtgctgc                                                                                   >  2:69936/1‑149 (MQ=255)                                                                aGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCa                                                                                                         <  8:80683/125‑1 (MQ=255)                                                                aGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCa                                                                                                         >  7:80683/1‑125 (MQ=255)                                                                 gcaCGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCAGCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGt                                                                                        >  4:91717/3‑141 (MQ=255)                                                                 gaaCGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGt                                                                                        <  3:91717/139‑1 (MQ=255)                                                                  gACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCCCGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGccccc                                                                               >  6:186951/1‑149 (MQ=255)                                                                          tCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGa                                                                       <  8:133469/149‑1 (MQ=255)                                                                             gACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCa                                                                    <  4:241457/149‑1 (MQ=255)                                                                              acgcacgcCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAg                                                                   >  4:191358/1‑149 (MQ=255)                                                                                  acgcCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTgacga                                                                                                                                               <  8:237427‑M2/69‑6 (MQ=255)                                                                                  acgcCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTgacga                                                                                                                                               >  7:237427‑M2/1‑64 (MQ=255)                                                                                           ccaGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTcg                                                      >  5:255992/1‑149 (MQ=255)                                                                                                   ttGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTg                                                                            >  6:218177/1‑119 (MQ=255)                                                                                                   ttGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTg                                                                            <  5:218177/119‑1 (MQ=255)                                                                                                    tGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCg                                             >  6:172386/1‑149 (MQ=255)                                                                                                     gCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCg                                             <  3:191358/148‑1 (MQ=255)                                                                                                      ccGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCcaca                                                                                            >  5:242404/1‑100 (MQ=255)                                                                                                      ccGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCcaca                                                                                            <  6:242404/100‑1 (MQ=255)                                                                                                       cGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTgacgaaatcggcaagcacctggtggaggcgtgcgtctgatggacgtcctcagcctgatcggtctgatcctggctttcgttgccattgtcggtggcaacttccttg                                           <  1:208220‑M2/148‑106 (MQ=255)                                                                                                        gATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGgcgc                                         <  5:235737/149‑1 (MQ=255)                                                                                                         aTTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGcc                                        <  3:342684/149‑1 (MQ=255)                                                                                                          tttCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGcc                                        >  1:192585/1‑148 (MQ=255)                                                                                                          tttCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGcc                                        >  8:136739/1‑148 (MQ=255)                                                                                                          tttCGTCGA‑GGCTGTACACGGCATACGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGgcgcgcg                                                            >  8:20945/1‑128 (MQ=255)                                                                                                          tttCGTCGA‑GGCTGTACACGGCATACGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGgcgcgcg                                                            <  7:20945/128‑1 (MQ=255)                                                                                                                 gA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTgacgaaatcggcaagcacctggtggaggcgtgcgtctgatggacgtcctcagcctgatcggtctgatcctggctttcgttgccattgt                                                            <  5:172153‑M2/121‑89 (MQ=255)                                                                                                                 gA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTgacgaaatcggcaagcacctggtggaggcgtgcgtctgatggacgtcctcagcctgatcggtctgatcctggctttcgttgccattgt                                                            >  6:172153‑M2/1‑33 (MQ=255)                                                                                                                    ggCTGTTCACGGCATCGGGCATGTTCGCCTTGACGTTGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCAt                                     <  7:19284/142‑1 (MQ=255)                                                                                                                    ggCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCAATAAATCACGCAGCTGGCTTCAACATGGGCCCACACCGTGCTGCCCCCCTGCTTCACCAGCCGCGCGCCCTCGCGGCCAACGGCGCCCATgagaacg                              >  8:19284/1‑143 (MQ=255)                                                                                                                     gCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGCCGGTGa                             <  5:172386/149‑1 (MQ=255)                                                                                                                     gCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGCCGGTGa                             <  7:136739/149‑1 (MQ=255)                                                                                                                        gTACACGGCATCCGCCAGGTTCGCCTAGACGAAGGCCATGGCCATGCCATAAATCACGCAGCTGTCTTCATCCTGGCCCCACACCCTGCTGCCACCCTGCTTGAGCAGGCGCGCGCCCTCGCGCCCATCTGCGACCATGCCGCAGAGca                          >  4:230260/1‑149 (MQ=255)                                                                                                                         tACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGCCGGTGAGcac                         >  1:216436/1‑149 (MQ=255)                                                                                                                         tACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGCCGGTGAGc                           <  2:192585/147‑1 (MQ=255)                                                                                                                              ggCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGCCGGTGAGCACCACCg                    >  2:195727/1‑149 (MQ=255)                                                                                                                                cATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGCCGGTGa                             >  2:61399/1‑138 (MQ=255)                                                                                                                                cATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGCCGGTGa                             <  1:61399/138‑1 (MQ=255)                                                                                                                                  tCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGCCGGTGAGCACCACCGacaa                <  2:216436/149‑1 (MQ=255)                                                                                                                                               ccTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGCCGGTGAGCACCACCGACAACACCTTGTCACCg   >  5:359923/1‑149 (MQ=255)                                                                                                                                                cTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGCCGGTGAGCACCACCGACAACACCTTGTCACCGt  <  6:255992/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                   CCGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGA‑GGCTGTACACGGCATCCGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGCCGGTGAGCACCACCGACAACACCTTGTCACCGT  >  NC_002947/4926696‑4926986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.