New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4951669 =	53 (0.960)	3 (0.060)	3/248	NT	5.4%	coding (604/1266 nt)	fliK	flagellar hook‑length control protein FliK
	?	NC_002947	4951723 =	54 (1.010)					coding (550/1266 nt)	fliK	flagellar hook‑length control protein FliK

AGGCGGTTGGCAAAATCATCGATGCGGGTGTCGCTGCTGGCGCTCTTGGTGTCTTTCAGGCCGTCTTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCACTGTGCTCCAGCGCCAGGCGCAGGGTCGGCAGGTTGGCCAGGGGGTCAGCATCCGGATCGAAGGCCTCCT  >  NC_002947/4951521‑4951815                                                                                                                                                     |                                                                                                                                                   aGGCGGTTGGCAAAATCATCGATGCGGGTGTCGCTGCTGGCGCTCTTGGTGTCTTTCAGGCCGTCTTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGAc                                                                                                                                                    >  2:6613/1‑149 (MQ=255)   ggccacggcgcaaacccaggtttccgcagcactgcctgaagagccgtccgccgaggaggccttcgatccggatgctgaccccctggccaacctgccgaccctgcgcctggcgctggagcacagtgcccaggccaaggggggcacctCgg                                                                                                                                                  >  6:24088‑M1/147‑149 (MQ=255)   gCGGTTGGCAAAATCATCGATGCGGGTGTCGCTGCTGGCGCTCTTGGTGTCTTTCAGGCCGTCTTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACgg                                                                                                                                                  >  5:209997/1‑149 (MQ=255)    gccacggcgcaaacccaggtttccgcagcactgcctgaagagccgtccgccgaggaggccttcgatccggatgctgaccccctggccaacctgccgaccctgcgcctggcgctggagcacagtgcccaggccaaggggggcacctCgg                                                                                                                                                  <  7:38963‑M1/3‑1 (MQ=255)       acggcgcaaacccaggtttccgcagcactgcctgaagagccgtccgccgaggaggccttcgatccggatgctgaccccctggccaacctgccgaccctgcgcctggcgctggagcacagtgcccaggccaaggggggcacctCGgccgc                                                                                                                                              <  4:280241‑M1/7‑1 (MQ=255)            gcaaacccaggtttccgcagcactgcctgaagagccgtccgccgaggaggccttcgatccggatgctgaccccctggccaacctgccgaccctgcgcctggcgctggagcacagtgcccaggccaaggggggcacctCGgc                                                                                                                                                 >  8:234114‑M1/138‑141 (MQ=255)            gcaaacccaggtttccgcagcactgcctgaagagccgtccgccgaggaggccttcgatccggatgctgaccccctggccaacctgccgaccctgcgcctggcgctggagcacagtgcccaggccaaggggggcacctCGgc                                                                                                                                                 <  7:234114‑M1/4‑1 (MQ=255)            aaaaTCATCGATGCGGGTGTCGCTGCTGGCGCTCTTGGTGTCTTTCAGGCCGTCTTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGcc                                                                                                                                         >  8:15300/1‑149 (MQ=255)                tcatcGATGCGGGTGTCGCTGCTGGCGCTCTTGGTGTCTTTCAGGCCGTCTTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTc                                                                                                                                     >  2:85206/1‑149 (MQ=255)                 catcGATGCGGGTGTCGCTGCTGGCGCTCTTGGTGTCATTCAGGCCGTCTTCACGCAAGGCACAAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCTTCGGTATGCTAGACCAGATTCGCCAAGGTATTGACGGCCTCCTGCCCATc                                                                                                                                     >  8:312322/1‑148 (MQ=255)                     gATGCGGGTGTCGCTGCTGGCGCTCTTGGTGTCTTTCAGGCCGTCTTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGgccgcc                                                                                                                                             <  4:269032/136‑1 (MQ=255)                     gATGCGGGTGTCGCTGCTGGCGCTCTTGGTGTCTTTCAGGCCGTCTTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGgccgcc                                                                                                                                             >  3:269032/1‑136 (MQ=255)                          gggTGTCGCTGCTGGCGCTCTTGGTGTCTTTCAGGCCGTCTTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGa                                                                                                                           <  1:6613/149‑1 (MQ=255)                             tgtCGCTGCTGGCGCTCTTGGTGTCTTTCAGGCCGTCTTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGcc                                                                                                                        >  5:3514/1‑149 (MQ=255)                                     ctgGCGCTCTTGGTGTCTTTCAGGCCGTCTTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGgcagc                                                                                                                <  6:209997/149‑1 (MQ=255)                                     ctgGCGCTCTTGGTGTCTTTCAGGCCGTCTTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGgcag                                                                                                                 <  2:205388/148‑1 (MQ=255)                                     ctgGCGCTCTTGGTGTCTTTCAGGCCGTCTTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCATGCCCTTCCTCGCCCTGAGCCTGGgcag                                                                                                                 >  5:335387/1‑148 (MQ=255)                                          gcTCTTGGTGTCTTTCCTGCCGTCTTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCCGCGCTTTCGCCATCGGTATACTCGACCAGATTCGCCAAGGTCTTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCaa                                                                                                           <  6:47373/149‑1 (MQ=255)                                            agccgtccgccgaggaggccttcgatccggatgctgaccccctggccaacctgccgaccctgcgcctggcgctggagcacagtgcccaggccaaggggggcacctCGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAgg                                                                                                         >  3:280241‑M1/106‑149 (MQ=255)                                                   cgccgaggaggccttcgatccggatgctgaccccctggccaacctgccgaccctgcgcctggcgctggagcacagtgcccaggccaaggggggcacctCGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCAtgtg                                                                                                  <  4:123072‑M1/51‑1 (MQ=255)                                                    tCTTTCAGGCCGTCGTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTggg                                                                                                                    >  7:304069/1‑130 (MQ=255)                                                    tCTTTCAGGCCGTCGTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTggg                                                                                                                    <  8:304069/130‑1 (MQ=255)                                                        aggaggccttcgatccggatgctgaccccctggccaacctgccgaccctgcgcctggcgctggagcacagtgcccaggccaaggggggcacctCGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAg                                                                                             >  3:123072‑M1/94‑149 (MQ=255)                                                          aGGCCGTCTTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGt                                                                                           <  6:335387/149‑1 (MQ=255)                                                          aGGCCGTCTTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGt                                                                                           >  1:329934/1‑149 (MQ=255)                                                            gCCGTCTTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGc                                                                                         <  8:22747/149‑1 (MQ=255)                                                             ccGTCTTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGgcagc                                                                                                                >  8:149474/1‑125 (MQ=255)                                                             ccGTCTTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGgcagc                                                                                                                <  7:149474/125‑1 (MQ=255)                                                                  ttCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCt                                                                                   >  3:180005/1‑149 (MQ=255)                                                                        caagGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCt                                                                             <  6:3514/149‑1 (MQ=255)                                                                           gtcACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTggg                                                                          <  7:312322/147‑1 (MQ=255)                                                                           ggCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTggg                                                                          <  1:85206/149‑1 (MQ=255)                                                                             cACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCa                                                                        >  1:353707/1‑149 (MQ=255)                                                                                     gCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCAt                                                                                                     <  5:63481/112‑1 (MQ=255)                                                                                     gCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCAt                                                                                                     >  6:63481/1‑112 (MQ=255)                                                                                       cTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCACCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGcc                                                                                        <  4:143654/123‑1 (MQ=255)                                                                                       cTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCACCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGcc                                                                                        >  3:143654/1‑123 (MQ=255)                                                                                           ccACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCACTGTGCTCCAgcgc                                                          >  8:38963/1‑149 (MQ=255)                                                                                            cACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCACTGTGc                                                                  <  5:79527/140‑1 (MQ=255)                                                                                            cACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCACTGTGc                                                                  >  6:79527/1‑140 (MQ=255)                                                                                             aCCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCACTGTGCTCCAgcgc                                                          >  1:54961/1‑147 (MQ=255)                                                                                                      aGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCACTGTGCTCCAGCGCCAGGCGCAggg                                               >  3:86313/1‑149 (MQ=255)                                                                                                          cTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCACTGTGCTCCAGCGCCAGGCGCAGGGTCgg                                           <  2:353707/149‑1 (MQ=255)                                                                                                                ccATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCACTGTGCTCCAGCGCCAGGCGCAGGGTCGGCAGGtt                                     >  6:303806/1‑149 (MQ=255)                                                                                                                       tATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCACTGTGCTCCAGCGCCAGGCGCAGGGTCGGCAGGTTGGCCAgg                              >  8:201586/1‑149 (MQ=255)                                                                                                                           cTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCACTGTGCTCCAGCGCCAGGCGCAGGGTCGGCAGGTTGGCCAGGGGGt                          >  6:323879/1‑149 (MQ=255)                                                                                                                              gACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCACTGTGCTCCAGCGCCAGGCGCAGGGTCGGCAGGTTGGCCAGGGGGTCa                        <  5:174292/148‑1 (MQ=255)                                                                                                                              gACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCACTGTGCTCCAGCGCCAGGCGCAGGGTCGGCAGGTTGGCCAGGGGGTCa                        <  2:54961/148‑1 (MQ=255)                                                                                                                                ccAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCACTGTGCTCCAGCGCCAGGCGCAg                                                 <  4:287020/121‑1 (MQ=255)                                                                                                                                ccAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCACTGTGCTCCAGCGCCAGGCGCAg                                                 >  3:287020/1‑121 (MQ=255)                                                                                                                                ccAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCACTGTGCTCCAGCGCCAGGCGCAGGGTCGGCAGGTTGGCCAGGGGGTCAGc                      >  2:161117/1‑148 (MQ=255)                                                                                                                                    aTTCGCCTAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCACTGTGCTCCAGCGCCAGGCGCAGGGTCGGCAGGTTGGCCAGGGGGTCAGCATCCg                 >  8:101614/1‑149 (MQ=255)                                                                                                                                    aTTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCACTGTGCTCCAGCGCCAGGCGCAGGGTCGGCAGGTTGGCCAGGGGGTCAGCATCCg                 >  5:53577/1‑149 (MQ=255)                                                                                                                                     ttCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCACTGTGCTCCAGCGCCAGGCGCAGGGTCGGCAGGTTGGCCAGGGGGTCAGCATCCgg                <  2:329934/149‑1 (MQ=255)                                                                                                                                        gCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCACTGTGCTCCAGCGCCAGGCGCAGGGTCGGCAGGTTGGCCAGGGGGTCAGCATCCGGAt              <  7:15300/148‑1 (MQ=255)                                                                                                                                          cAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCACTGTGCTCCAGCGCCAGGCGCAGGGTCGGCAGGTTGGCCAGGGGGTCAGCATc                   >  7:152640/1‑141 (MQ=255)                                                                                                                                          cAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCACTGTGCTCCAGCGCCAGGCGCAGGGTCGGCAGGTTGGCCAGGGGGTCAGCATc                   <  8:152640/141‑1 (MQ=255)                                                                                                                                          cAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCACTGTGCTCCAGCGCCAGGCGCAGGGTCGGCAGGTTGGCCAGGGGGTCAGCATCCGGATCg            >  6:340767/1‑148 (MQ=255)                                                                                                                                             ggTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCACTGTGCTCCAGCGCCAGGCGCAGGGTCGGCAGGTTGGCCAGGGGGTCAGCATCCGGATCGAAgg        <  4:86313/149‑1 (MQ=255)                                                                                                                                              gTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCACTGTGCTCCAGCGCCAGGCGCAGGGTCGGCAGGTTGGCCAGGGGGTCAGCATCCGGATCGAAGGc       >  5:332131/1‑149 (MQ=255)                                                                                                                                               tATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCACTGTGCTCCAGCGCCAGGCGCAGGGTCGGCAGGTTGGCCAGGGGGTCa                        >  3:152317/1‑131 (MQ=255)                                                                                                                                               tATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCACTGTGCTCCAGCGCCAGGCGCAGGGTCGGCAGGTTGGCCAGGGGGTCa                        <  4:152317/131‑1 (MQ=255)                                                                                                                                               tATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCACTGTGCTCCAGCGCCAGGCGCAGGGTCGGCAGGTTGGCCAGGGGGTCAGCATCCGGATCGAAGGcc      >  6:222626/1‑149 (MQ=255)                                                                                                                                                   gACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCACTGTGCTCCAGCGCCAGGCGCAGGGTCGGCAGGTTGGCCAGGGGGTCAGCATCCGGATCGAAGGcctcct  >  8:182854/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                   AGGCGGTTGGCAAAATCATCGATGCGGGTGTCGCTGCTGGCGCTCTTGGTGTCTTTCAGGCCGTCTTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCCGCCTGCCCTTCCTCGCCCTGAGCCTGGGCAGCATCAAGGGCATGTGCCGAGGTGCCCCCCTTGGCCTGGGCACTGTGCTCCAGCGCCAGGCGCAGGGTCGGCAGGTTGGCCAGGGGGTCAGCATCCGGATCGAAGGCCTCCT  >  NC_002947/4951521‑4951815

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.