New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5162502 =	40 (0.720)	4 (0.080)	4/224	NT	11.8%	intergenic (+25/+176)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
	?	NC_002947	5162542 =	25 (0.520)					intergenic (+65/+136)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase

CAAGAACTTCTCCCTGGGTGCTGCCTACCTGATGGCCAAGACCGACCTGTCGCAGCTGCCGA‑ACAGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCC  >  NC_002947/5162363‑5162647                                                                                                                                             |                                                                                                                                                  cAAGAACTTCTCCCTGGGTGCTGCCTACCTGATGGCCAAGACCGACCTGTCGCAGCTGCCGA‑ACAGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGa                                                                                                                                           >  1:266293/1‑148 (MQ=255)  tgattcatcaggcgcctgttacggcctcttcgcgggcttgcccgctcccacaggtacagcacagttctcaaggtctgtggtgatactgtgggagcgggcaagcccgcgaaggggccggcgcatttcacacagacaaaaaGAAGCGGGa                                                                                                                                           <  7:321717‑M1/9‑1 (MQ=255)        ttCTCCCTGGGTGCTGCCTACCTGATGGCCAAGACCGACCTGTCGCAGCTGCCGA‑ACAGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCgc                                                                                                                                   >  1:200227/1‑148 (MQ=255)        ttCTCCCTGGGTGCTGCCTACCTGATGGCCAAGACCGACCTGTCGCAGCTGCCGA‑ACAGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGa                                                                                                                                   >  2:101459/1‑149 (MQ=255)                      tgcCTACCTGATGGCCAAGACCGACCTGTCGCAGCTGCCGA‑ACAGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCCTCCGGccgt                                                                                                                     >  2:316190/1‑146 (MQ=255)                      tgcCTACCTGATGGCCAAGACCGACCTGTCGCAGCTGCCGA‑ACAGCAATGATGACGTCGACACCCTGCAGGTCGACCTGGAAGCCAAGTTCTAAGCAACACACTGCCCTGCATCACCTGAAGCGGGAAAAGCCGCCCCCAACCcgcggt                                                                                                                     >  3:68368/1‑147 (MQ=255)                       gcCTACCTGATGGCCAAGACCGACCTGTCGCAGCTGCCGA‑ACAGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGc                                                                                                                                               >  2:123481/1‑122 (MQ=255)                           aCCTGATGGCCAAGACCGACCTTTCGCAGCGGCCGA‑ACATCAATGCTGACGTCGACACCCTGCCGGTAGACCTGGAAGCCACGTGCTACGCAACACCCTGCTCTTCTTCACCTGAAGCGTGAAACGCCGACCCCATCCGGCGTTTCCCg                                                                                                                <  6:58360/149‑1 (MQ=255)                               gATGGCCAAGACCGACCTGTCGCAGCTGCCGAGACAGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGctt                                                                                                             >  1:43397/1‑149 (MQ=255)                                aTGGCCAAGACCGACCTGTCGCAGCTGCCGA‑ACAGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGcttct                                                                                                           >  6:339327/1‑149 (MQ=255)                                    ccAAGACCGACCTGTCGCAGCTGCCGA‑ACAGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCttttt                                                                                                       >  3:87380/1‑149 (MQ=255)                                    ccAAGACCGACCTGTCGCAGCTGCCGA‑ACAGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCttttt                                                                                                       <  5:339327/149‑1 (MQ=255)                                    ccAAGACCGACCTGTCGCAGCTGCCGA‑ACAGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCttttt                                                                                                       >  1:286958/1‑149 (MQ=255)                                          ccgaccTGTCGCAGCTGACGA‑ACAGCAATGCTGACGTGGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCCCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCtgt                                                                                                 <  4:68368/149‑1 (MQ=255)                                             accTGTCGCAGCTGCCGA‑ACAGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGCCCCCATCCGGCGGTTACCGCTTAGTTTTGTCtgtgt                                                                                               >  2:120750/1‑148 (MQ=255)                                                       gCTGCCGA‑ACAGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCg                                                                                    <  2:200227/149‑1 (MQ=255)                                                       gCTGCCGA‑ACAGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCg                                                                                    <  4:87380/149‑1 (MQ=255)                                                         tGCCGA‑ACAGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGc                                                                                  >  7:30788/1‑149 (MQ=255)                                                           ccca‑aCAGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGctt                                                                                                             <  2:122897/117‑1 (MQ=255)                                                              a‑aCAGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGCCCCCCACCCGCGGTTCCCGCGTCGTTTTGTGTGTGTGAAAATCGCCGGgcccc                                                                              >  3:22043/1‑147 (MQ=255)                                                                  aGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATgc                                                                                        <  3:321043/135‑1 (MQ=255)                                                                  aGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCAACCGGCGTTTACCGCGTGGTTTTGTCTGTGTGAAAttc                                                                                        >  4:321043/1‑133 (MQ=255)                                                                   gCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTcgcg                                                                         <  2:286958/149‑1 (MQ=255)                                                                   gCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAAACCCGACCCCCAACGCCCTTTACCCCTTATTTTTGTCTGTTTGAAATGAGCCGGCCCCTTagcg                                                                         >  4:243108/1‑149 (MQ=255)                                                                    cAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCgg                                                                        <  3:243108/149‑1 (MQ=255)                                                                      aTGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGc                                                                                                               >  7:19973/1‑108 (MQ=255)                                                                      aTGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGc                                                                                                               <  8:19973/108‑1 (MQ=255)                                                                                 gACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCAAGCCCGcgaa                                                           <  1:101459/149‑4 (MQ=255)                                                                                    acCCTGCTGGTAGACCTGGAAGCCAATTTCTAAGCACCACCCTGCTCTGCTTCAGATGAAGCGGGAAACGCGGACGCCATCCGGCGTTTCGCGGTTCTTTTTGTCTGTGTGAAATGCGCCGGCCACTTCGCGGGCTTGCCCGCTCCcac                                                        <  4:22043/149‑1 (MQ=255)                                                                                     cccTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCcaca                                                       <  2:43397/149‑1 (MQ=255)                                                                                      ccTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGttt                                                                                                                    >  7:96277/1‑87 (MQ=255)                                                                                      ccTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGttt                                                                                                                    <  8:96277/87‑1 (MQ=255)                                                                                      ccTGCAGGTAGACCTGGAAGCCAAGTGCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCtgtgtg                                                                                              <  3:331921/109‑1 (MQ=255)                                                                                                   gcaagcccgcgaaggggccggcgcatttcacacagacaaaaaGAAGCGGGAAACGCCGACCCCATCCGGCGTTTccc                                                                                                                 >  2:83734‑M1/43‑77 (MQ=255)                                                                                                   gcaagcccgcgaaggggccggcgcatttcacacagacaaaaaGAAGCGGGAAACGCCGACCCCATCCGGCGTTTccc                                                                                                                 <  1:83734‑M1/35‑1 (MQ=255)                                                                                                      gAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCtt                                      <  8:30788/149‑1 (MQ=255)                                                                                                        aGCCAATTTAAAACCAACACCCTGCTCGGATTCACCTGATGGGGTAAACGCCGACCCCTTCCGGGTTTGCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTga                                    <  1:176683/149‑1 (MQ=255)                                                                                                         ccgcgaaggggccggcgcatttcacacagacaaaaaGAAGCGGGAAACGCCGACCCCATCCGGCGTTTcc                                                                                                                  >  4:46992‑M1/37‑70 (MQ=255)                                                                                                         ccgcgaaggggccggcgcatttcacacagacaaaaaGAAGCGGGAAACGCCGACCCCATCCGGCGTTTcc                                                                                                                  <  3:46992‑M1/34‑1 (MQ=255)                                                                                                               ttCTAAGCAACACCCTGCTCTGGTTCACGTGAAGGGGGAAACGCCGACCCTATCGGTCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCGTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACtgt                             <  4:264763/149‑1 (MQ=255)                                                                                                                 cTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACtgtg                            <  1:316190/148‑1 (MQ=255)                                                                                                                    aGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCt                          <  2:266293/147‑1 (MQ=255)                                                                                                                      cAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTAc                      >  3:54173/1‑149 (MQ=255)                                                                                                                            ccTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTgg                <  4:54173/149‑1 (MQ=255)                                                                                                                                     ctTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCt                          <  5:359900/130‑1 (MQ=255)                                                                                                                                     ctTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCt                          >  6:359900/1‑130 (MQ=255)                                                                                                                                          ccTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGccc  <  1:330224/149‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                  CAAGAACTTCTCCCTGGGTGCTGCCTACCTGATGGCCAAGACCGACCTGTCGCAGCTGCCGA‑ACAGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCC  >  NC_002947/5162363‑5162647

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.