New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5162502 =	40 (0.720)	4 (0.080)	4/224	NT	11.8%	intergenic (+25/+176)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
	?	NC_002947	5162542 =	25 (0.520)					intergenic (+65/+136)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase

ATGGCCAAGACCGACCTGTCGCAGCTGCCGAACAGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCA  >  NC_002947/5162394‑5162680                                                                                                                                                     |                                                                                                                                           aTGGCCAAGACCGACCTGTCGCAGCTGCCGAACAGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGcttct                                                                                                                                            >  6:339327/1‑149 (MQ=255)     ccAAGACCGACCTGTCGCAGCTGCCGAACAGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCttttt                                                                                                                                        <  5:339327/149‑1 (MQ=255)     ccAAGACCGACCTGTCGCAGCTGCCGAACAGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCttttt                                                                                                                                        >  1:286958/1‑149 (MQ=255)     ccAAGACCGACCTGTCGCAGCTGCCGAACAGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCttttt                                                                                                                                        >  3:87380/1‑149 (MQ=255)           ccgaccTGTCGCAGCTGACGAACAGCAATGCTGACGTGGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCCCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCtgt                                                                                                                                  <  4:68368/149‑1 (MQ=255)              accTGTCGCAGCTGCCGAACAGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGCCCCCATCCGGCGGTTACCGCTTAGTTTTGTCtgtgt                                                                                                                                >  2:120750/1‑148 (MQ=255)                        gCTGCCGAACAGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCg                                                                                                                     <  4:87380/149‑1 (MQ=255)                        gCTGCCGAACAGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCg                                                                                                                     <  2:200227/149‑1 (MQ=255)                          tGCCGAACAGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGc                                                                                                                   >  7:30788/1‑149 (MQ=255)                               aaCAGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGCCCCCCACCCGCGGTTCCCGCGTCGTTTTGTGTGTGTGAAAATCGCCGGgcccc                                                                                                               >  3:22043/1‑147 (MQ=255)                                  aGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATgc                                                                                                                         <  3:321043/135‑1 (MQ=255)                                  aGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCAACCGGCGTTTACCGCGTGGTTTTGTCTGTGTGAAAttc                                                                                                                         >  4:321043/1‑133 (MQ=255)                                   gCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTcgcg                                                                                                          <  2:286958/149‑1 (MQ=255)                                   gCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAAACCCGACCCCCAACGCCCTTTACCCCTTATTTTTGTCTGTTTGAAATGAGCCGGCCCCTTagcg                                                                                                          >  4:243108/1‑149 (MQ=255)                                    cAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCgg                                                                                                         <  3:243108/149‑1 (MQ=255)                                                 gACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCAAGCCCGcgaa                                                                                            <  1:101459/149‑4 (MQ=255)                                                    acCCTGCTGGTAGACCTGGAAGCCAATTTCTAAGCACCACCCTGCTCTGCTTCAGATGAAGCGGGAAACGCGGACGCCATCCGGCGTTTCGCGGTTCTTTTTGTCTGTGTGAAATGCGCCGGCCACTTCGCGGGCTTGCCCGCTCCcac                                                                                         <  4:22043/149‑1 (MQ=255)                                                     cccTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCcaca                                                                                        <  2:43397/149‑1 (MQ=255)                                                      ccTGCAGGTAGACCTGGAAGCCAAGTGCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCtgtgtg                                                                                                                               <  3:331921/109‑1 (MQ=255)                                                                      gAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCtt                                                                       <  8:30788/149‑1 (MQ=255)                                                                        aGCCAATTTAAAACCAACACCCTGCTCGGATTCACCTGATGGGGTAAACGCCGACCCCTTCCGGGTTTGCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTga                                                                     <  1:176683/149‑1 (MQ=255)                                                                               ttCTAAGCAACACCCTGCTCTGGTTCACGTGAAGGGGGAAACGCCGACCCTATCGGTCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCGTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACtgt                                                              <  4:264763/149‑1 (MQ=255)                                                                                 cTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACtgtg                                                             <  1:316190/148‑1 (MQ=255)                                                                                    aGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCt                                                           <  2:266293/147‑1 (MQ=255)                                                                                      cAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTAc                                                       >  3:54173/1‑149 (MQ=255)                                                                                            ccTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTgg                                                 <  4:54173/149‑1 (MQ=255)                                                                                                     ctTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCt                                                           >  6:359900/1‑130 (MQ=255)                                                                                                     ctTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCt                                                           <  5:359900/130‑1 (MQ=255)                                                                                                          ccTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGccc                                   <  1:330224/149‑1 (MQ=255)                                                                                                              accCGGTAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCcgc                                 >  1:120750‑M1/4‑147 (MQ=255)                                                                                                                  gggaaacgccggatggggtcggcgtttcccgcttcTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGc                                                                                                   >  2:83734‑M2/36‑77 (MQ=255)                                                                                                                  gggaaacgccggatggggtcggcgtttcccgcttcTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGc                                                                                                   <  1:83734‑M2/42‑1 (MQ=255)                                                                                                                   ggaaacgccggatggggtcggcgtttcccgcttcTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCgg                                                                                                         >  4:46992‑M2/35‑70 (MQ=255)                                                                                                                   ggaaacgccggatggggtcggcgtttcccgcttcTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCgg                                                                                                         <  3:46992‑M2/36‑1 (MQ=255)                                                                                                                                            tcccgcttcTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCa  <  7:321717‑M2/139‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                           ATGGCCAAGACCGACCTGTCGCAGCTGCCGAACAGCAATGCTGACGTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCA  >  NC_002947/5162394‑5162680

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.