New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5496396	42 (0.760)	3 (0.060)	3/240	NT	6.9%	coding (289/1332 nt)	cobG	precorrin‑3B synthase
	?	NC_002947	= 5496434	42 (0.810)					coding (251/1332 nt)	cobG	precorrin‑3B synthase

CGACAGCTGGTGAAAGCGCGGGGTGCCTTCCAACAGGTCGAGGATCTGCCCGGCCAGCGGCCTGGCGTCCAGCAGCATGAGCGGGTCATGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGCCACGAATCTGCAGGTTGCCACGGTTGGTGGCCTCGATCACGCCGCCAGCAAAACGCTCCGCCGCCGCCGCCACGGCTTCAGCCTGCTCG  >  NC_002947/5496253‑5496544                                                                                                                                                |                                                                                                                                                     cGACAGCTGGTGAAAGCGCGGGGTGCCTTCCAACAGGTCGAGGATCTGCCCGGCCAGCGGCCTGGCGTCCAGCAGCATGAGCGGGTCATGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTc                                                                                                                                                 <  6:86309/149‑1 (MQ=255)          ttGAAATCCCGGTGTGCATTCCAACAGGTCGAGCATCTGCCCGGCCATCGTCCTTGCGTACAGAAGAATTAGCGGTTCATGCCCTGCCAGTGGGCTGAGCATCAAGTTGCGCAAATCTTCACCCGCGGCATAGCGAGGTCACAGGCCg                                                                                                                                         <  6:283385/147‑1 (MQ=255)          gTGAAAGCGCGGGGTGCCTTCCAACAGGTCGAGGATCTGCCCGGCCAGCGGCCTGGCGTCCAGCAGCATGAGCGGGTCATGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGcc                                                                                                                                          <  5:315486/147‑1 (MQ=255)            gAAAGCGCGGGGTGCCTTCCAACAGGTCGAGGATCTGCCCGGCCAGCGGCCTGGCGTCCAGCAGCATGAGCGGGTCATGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCt                                                                                                                                      >  5:209929/1‑149 (MQ=255)            gAAAGCGCGGGGTGCCTTCCAACAGGTCGAGGATCTGCCCGGCCAGCGGCCTGGCGTCCAGCAGCATGAGCGGGTCATGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCt                                                                                                                                      >  3:132064/1‑149 (MQ=255)               aGCGCGGGGTGCCTTCCAACAGGTCGAGGATCTGCCCGGCCAGCGGCCTGGCGTCCAGCAGCATGAGCGGGTCATGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGc                                                                                                                                    >  7:16369/1‑148 (MQ=255)                       gTGCCTTCCAACAGGTCGAGGATCTGCCCGGCCAGCGGCCTGGCGTCCAGCAGCATGAGCGGGTCATGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGc                                                                                                                           >  4:180951/1‑149 (MQ=255)                          ccTTCCAACAGGTCGAGGATCTGCCCGGCCAGCGGCCTGGCGTCCAGCAGCATGAGCGGGTCATGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTc                                                                                                                        <  7:163638/149‑1 (MQ=255)                           cTTCCAACAGGTCGAGGATCTGCCCGGCCAGCGGCCTGGCGTCCAGCAGCATGAGCGGGTCATGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCg                                                                                                                       <  8:121006/149‑1 (MQ=255)                              ccAACAGGTCGAGGATCTGCCCGGCCAGCGGCCTGGCGTCCAGCAGCATGAGCGGGTCATGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGa                                                                                                                      <  3:180951/147‑1 (MQ=255)                               cAACAGGTCGAGGATCTGCCCGGCCAGCGGCCTGGCGTCCAGCAGCATGAGCGGGTCATGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGAcc                                                                                                                    >  3:246461/1‑148 (MQ=255)                                 aCAGGTCGAGGATCTGCCCGGCCAGCGGCCTGGCGTCCAGCAGCATGAGCGGGTCATGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCaaa                                                                                                                 <  8:16369/149‑1 (MQ=255)                                       cGAGGATCTGCCCGGCCAGCGGCCTGGCGTCCAGCAGCATGAGCGGGTCATGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGcg                                                                                                              >  3:145219‑M2/1‑144 (MQ=255)                                       cGAGGATCTGCCCGGCCAGCGGCCTGGCGTCCAGCAGCATGAGCCGGTCATGCCCGGCCAGTGGCCTGAGGATCACCTTGCGCACATCGTCACCCGCGGCAACGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCAACGACCAAAGcgca                                                                                                            <  4:145219‑M2/148‑5 (MQ=255)                                         aGGATCTGCCCGGCCAGCGGCCTGGCGTCCAGCAGCATGAGCGGGTCATGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGctttggtcgaggcactgctcgcagccggcctgggaccacgcgatg                                                                                                         <  5:6466‑M1/149‑46 (MQ=255)                                          ggATCTGCCCGGCCAGCGGCCTGGCGTCCAGCAGCATGAGCGGGTCATGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGTCGGCTGCGAGCAGTGCCTCGACCAAAGcgcgatgc                                                                                                        <  2:300151‑M2/149‑9 (MQ=255)                                          ggATCTGCCCGGCCAGCGGCCTGGCGTCCAGCAGCATGAGCGGGTCATGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGcgcgatgc                                                                                                        <  3:35162‑M2/149‑9 (MQ=255)                                            aTCTGCCCGGCCAGCGGCCTGGCGTCCAGCAGCATGAGCGGGTCATGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTc                                                                                                      >  1:72700/1‑149 (MQ=255)                                                       cAGCGGCCTGGCGTCCAGCAGCATGAGCGGGTCATGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGTCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGc                                                                                           <  1:300151/149‑1 (MQ=255)                                                         gCGGCCTGGCGTCCAGCAGCATGAGCGGGTCATGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGCCa                                                                                         <  5:53996/149‑1 (MQ=255)                                                               tGGCGTCCAGCAGCATGAGCGGGTCATGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGctttggtcgaggcactgctcgcagccggcctgggaccacgcgatgccg                                                                                                      <  2:295125‑M1/130‑49 (MQ=255)                                                               tGGCGTCCAGCAGCATGAGCGGGTCATGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGctttggtcgaggcactgctcgcagccggcctgggaccacgcgatgccg                                                                                                      >  1:295125‑M1/1‑82 (MQ=255)                                                                    tCCAGCAGCATGAGCGGGTCATGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGCCACGAATCTGCAg                                                                              <  6:209929/149‑1 (MQ=255)                                                                      gccgggcaTGACCCGCTCATGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGCCACGAATCTGCAGGt                                                                            >  7:30213/6‑149 (MQ=255)                                                                       agcagcATGAGCGGGTCATGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGCCACGAATCTGCAGGtt                                                                           >  3:97835/1‑149 (MQ=255)                                                                           gcaTGACCCGCTCATGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGCCACGAATCTGCAGGTTGCCa                                                                       >  4:144805/1‑149 (MQ=255)                                                                                    ggTCATGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGCCACGAATCTGCAGGTTGCCACGGTtggtg                                                              >  6:165863/1‑149 (MQ=255)                                                                                    ggTCATGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGCCACGAATCTGCAGGTTGCCACGGTtggtg                                                              <  2:72700/149‑1 (MQ=255)                                                                                      tCATGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGCCACGAATCTGCAGGTTGCCACGGTTGGTGGc                                                            >  6:60492/1‑149 (MQ=255)                                                                                        aTGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGc                                                                                                 <  1:40553/110‑1 (MQ=255)                                                                                        aTGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGc                                                                                                 >  2:40553/1‑110 (MQ=255)                                                                                            ccGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCg                                                                                                                                         <  6:296806/66‑1 (MQ=255)                                                                                            ccGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCg                                                                                                                                         >  5:296806/1‑66 (MQ=255)                                                                                            ccGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGCCACGAATCTGCAGGTTGCCACGGTTGGTGGCCTCGAt                                                      <  2:220649/149‑1 (MQ=255)                                                                                               gCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGCCACGAATCTGCAGGTTGCCACGGTTGGTGGCCTCGATCAc                                                   <  3:144805/149‑1 (MQ=255)                                                                                               gCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGCCACGAATCTGCAGGTTGCCACGGTTGGTGGCCTCGATCAc                                                   <  5:165863/149‑1 (MQ=255)                                                                                                      ggCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGCCACGAATCTGCAGGTTGCCACGGTTGGTGGCCTCGATCAcgccgc                                              >  6:277255/1‑147 (MQ=255)                                                                                                       gCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGCCACGAATCTGCAGGTTGCCACGGTTGGTGGCCTCGATCACGCCGCCAg                                           >  6:43029/1‑149 (MQ=255)                                                                                                        cTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGCCACGAATCTGCAGGTTGCCACGGTTGGTGGCCTCGATCACGCCGCCAg                                           >  2:113443/1‑148 (MQ=255)                                                                                                              aTCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGCCACGAATCTGCAGGTTGCCACGGTTGGTGGCCTCGATCACGCCGCCAGCAAAACg                                    >  6:95701/1‑149 (MQ=255)                                                                                                               tCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGCCACGAATCTGCAGGTTGCCACGGTTGGTGGCCTCGATCACGCCGCCAGCAAAACGc                                   >  5:311371/1‑149 (MQ=255)                                                                                                                 aCGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGCCACGAATCTGCAGGTTGCCACGGTTGGTGGCCTCGATCACGCCGCCAGCAAAACGCTc                                 <  5:277255/149‑1 (MQ=255)                                                                                                                   gTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGCCACGAATCTGCAGGTTGCCACGGTTGGTGGCCTc                                                         <  6:238633/123‑1 (MQ=255)                                                                                                                   gTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCAGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGCCACGAATCTGCAGGTTGCCACGGTTGGTGGCCTc                                                         >  5:238633/1‑123 (MQ=255)                                                                                                                      gcgcACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGCCACGAATCTGCAGGTTGCCACGGTTGGTGGCCTCGATCACGCCGCCAGCAAAACGCTccgcc                             <  8:30213/148‑1 (MQ=255)                                                                                                                        gcACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGCCACGAATCTGCAGGTTGCCACGGTTGGTGGCCTCGATCACGCCGCCAGCAAAACGCTccgccgcc                          <  4:97835/149‑1 (MQ=255)                                                                                                                            aTCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGCCACGAATCTGCAGGTTGCCACGGTTGGTGGCCTCGATCACGCCGCCAGCAAAACGCTccgccgccgccg                      >  4:1306/1‑149 (MQ=255)                                                                                                                              cGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGCCACGAATCTGCAGGTTGCCACGGTTGGTGGCCTCGATCACGCCGCCAGCAAAACGCTCcgccgccgccgc                     >  6:28749/1‑148 (MQ=255)                                                                                                                                tCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGCCACGAATCTGCAGGTTGCCACGGTTGGTGGCCTCGATCACGCCGCCAGCAAAACGCTCCGCCGCCGCCGCCAc                  >  1:189055/1‑149 (MQ=255)                                                                                                                                    ccGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGCCACGAATCTGCAGGTTGCCACGGTTGGTGGCCTCGATCACGCCGCCAGCAAAACGCTCCGCCGCCGCCGCCACGGCt              >  2:155853/1‑149 (MQ=255)                                                                                                                                       cgGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGcgcgatgccgcgggtgacgatgtgcgcaacgtgatgctcagcccactggccgggcatgacccgctcatgctgctggacgcca                              <  2:295125‑M2/130‑83 (MQ=255)                                                                                                                                       cgGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGcgcgatgccgcgggtgacgatgtgcgcaacgtgatgctcagcccactggccgggcatgacccgctcatgctgctggacgcca                              >  1:295125‑M2/1‑48 (MQ=255)                                                                                                                                         gCATCGCGctttggtcgaggcactgctcgcagccggcctgggaccacgcgatgccgcgggtgacgatgtgcgcaacgtgatgctcagcccactggccgggcatgacccgctcatgctgctggacgccaggccgctggccgggcagatcc         <  3:35162‑M1/149‑142 (MQ=255)                                                                                                                                         gCATCGCGctttggtcgaggcactgctcgcagccgacctgggaccacgcgatgccgcgggtgacgatgtgcgcaacgtgatgctcagcccactggccgggcatgacccgctcatgctgctggacgccaggccgctggccgggcagatcc         <  2:300151‑M1/149‑142 (MQ=255)                                                                                                                                          cATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGcgcgatgccgcgggtgacgatgtgcgcaacgtgatgctcagcccactggccgggcatgacccgctcatgctgctggacgccaggccgctggccgggcagatcct        <  5:6466‑M2/149‑105 (MQ=255)                                                                                                                                             tgcgctttggtcgttgcactgctcgcagccggcctgggaccacgcgttgccgcgggtgacgatgtgcgcaaggtgatcctcaggccactggccgggcatgaccggctcatgctgctggacgccaggccgctggccgggcagatcctcg      <  4:145219‑M1/147‑145 (MQ=255)                                                                                                                                              gcgTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGCCACGAATCTGCAGGTTGCCACGGTTGGTGGCCTCGATCACGCCGCCAGCAAAACGCTCCGCCGCCGCCGCCACGGCTTCAGCCTGc     <  1:155853/148‑1 (MQ=255)                                                                                                                                               cgctttggtcgaggcactgctcgcagccggcctgggaccacgcgatgccgcgggtgacgatgtgcgcaacgtgatgctcagcccactggccgggcatgacccgctcatgctgctggacgccaggccgctggccgggcagatcctcg      >  3:145219‑M1/1‑2 (MQ=255)                                                                                                                                                gTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCTCTGCCAATGCCACGAATCTGCAGGTTGCCACGGTTGGTGGCCTCGATCACGCCGCCAGCAAAACGCTCCGCCGCCGCCGCCACGGCTTCAGCCTGCTCg  <  5:28749/149‑1 (MQ=255)                                                                                                                                                gTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGCCACGAATCTGCAGGTTGCCACGGTTGGTGGCCTCGATCACGCCGCCAGCAAAACGCTCCGCCGCCGCCGCCACGGCTTCAGCCTGCTCg  >  3:122353/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                     CGACAGCTGGTGAAAGCGCGGGGTGCCTTCCAACAGGTCGAGGATCTGCCCGGCCAGCGGCCTGGCGTCCAGCAGCATGAGCGGGTCATGCCCGGCCAGTGGGCTGAGCATCACGTTGCGCACATCGTCACCCGCGGCATCGCGTGGTCCCAGGCCGGCTGCGAGCAGTGCCTCGACCAAAGCGCGATGCTCGCTGCCAATGCCACGAATCTGCAGGTTGCCACGGTTGGTGGCCTCGATCACGCCGCCAGCAAAACGCTCCGCCGCCGCCGCCACGGCTTCAGCCTGCTCG  >  NC_002947/5496253‑5496544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.