New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5698743	27 (0.490)	7 (0.150)	5/222	NT	23.2%	intergenic (+33/‑134)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
	?	NC_002947	= 5698792	23 (0.480)					intergenic (+82/‑85)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein

GGGCGACCTGGCCAGCACCCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGC  >  NC_002947/5698596‑5698881                                                                                                                                                    |                                                                                                                                           gggCGACCTGGCCAGCACCCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGC                                                                                                                                            >  8:101457‑M1/1‑148 (MQ=255)  ggCGACCTGGCCAGCACCCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTc                                                                                                                                          <  3:13000/149‑1 (MQ=255)       ccTGGCCAGCACCCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCACGGCCGCaccagca                                                                                                                                     >  3:265804‑M1/1‑142 (MQ=255)                                ccGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCccccgcacggatcaccacaggcccaagggttg                                                                                                            <  5:318577‑M1/149‑33 (MQ=255)                                ccGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCccccgcacggatcaccacaggcccaagggttg                                                                                                            <  3:68864‑M1/149‑33 (MQ=255)                                    tCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCccccgcacggatcaccacaggcccaagggttgtggt                                                                                                        >  1:317599‑M1/1‑113 (MQ=255)                                    tCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTgtggt                                                                                                        >  5:365720/1‑149 (MQ=255)                                      cAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGa                                                                                                      >  7:337150/1‑149 (MQ=255)                                      cAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGa                                                                                                      <  6:365720/149‑1 (MQ=255)                                       aGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGAt                                                                                                     >  1:258126/1‑149 (MQ=255)                                        gATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCcaccac                                                                                                                          >  8:210319/1‑127 (MQ=255)                                        gATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCcaccac                                                                                                                          <  7:210319/127‑1 (MQ=255)                                          tCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGc                                                                                                               <  8:169050/136‑1 (MQ=255)                                          tCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGc                                                                                                               >  7:169050/1‑136 (MQ=255)                                            gACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTg                                                                                                <  8:337150/149‑1 (MQ=255)                                             aCGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCTCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACgcgc                                                                                                                                >  5:258135/1‑116 (MQ=255)                                             aCGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACgcgc                                                                                                                                <  6:258135/116‑1 (MQ=255)                                               gcggcgTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCgg                                                                                             <  7:101457/149‑1 (MQ=255)                                                 ggcgTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCccccgcacggatcaccacaggcccaagggttgtggtggcgcgtgcagga                                                                                           <  2:317599‑M1/149‑50 (MQ=255)                                                   cgTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCAGgagc                                                                                         <  7:108614/149‑1 (MQ=255)                                                       tgtgAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGGCCGGCCGCGACTGGACGCGCCACGTCCCACCTTGGGGCGGTGGGGTTGCGTTCGggggggggg                                                                                     >  1:247017/1‑148 (MQ=255)                                                           aaCAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTc                                                                                                                                          <  8:174693/92‑1 (MQ=255)                                                           aaCAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTc                                                                                                                                          >  7:174693/1‑92 (MQ=255)                                                            aCAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGgcgggcttgcc                                                                                >  2:258126‑M2/1‑138 (MQ=255)                                                               gCCACCTGGGGGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGgcgggcttgcccgc                                                                             >  7:154176‑M2/1‑135 (MQ=255)                                                                           cgcggccacacaACGAAGACCTGGCGGTTTACTTTCTTACAGCCGGGTTCCCACTGTTCCGGGGCCACCCCCGCGCCGGCCCGCCCCCCCACACCCCTGGGGCCGGGGTTGATCGGGGCGGGGGGGGGCTTGCCCGCGAAGAGGCCCtt                                                                 <  6:206838/143‑1 (MQ=255)                                                                           aGCTGGCACAGAACGAAGACCTGGCGCGTTACATTCTGTAAGCCCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCCCGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCtt                                                                 <  7:328186/149‑1 (MQ=255)                                                                                gCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCccccgcacggatcaccacaggcccaagggttgtggtggcgcgtgcaggagcggg                                                                                      >  2:352284‑M1/1‑69 (MQ=255)                                                                                gCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCccccgcacggatcaccacaggcccaagggttgtggtggcgcgtgcaggagcggg                                                                                      <  1:352284‑M1/123‑55 (MQ=255)                                                                                        cGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTccccc                                                    <  7:90229/149‑1 (MQ=255)                                                                                             aCCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGAGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAag                                                                         >  3:100657/1‑123 (MQ=255)                                                                                             aCCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGAGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAag                                                                         <  4:100657/123‑1 (MQ=255)                                                                                                         aCATTCTGTACGACCGGTTTCGACCGTTTCGCGGGCAAGCCCGCGCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTTCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCtgt                                    <  1:260377/148‑1 (MQ=255)                                                                                                                       cGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCgg                                                                                             >  2:81510/1‑77 (MQ=255)                                                                                                                       cGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCgg                                                                                             <  1:81510/77‑1 (MQ=255)                                                                                                                                    ttCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGcc        >  7:195611/1‑149 (MQ=255)                                                                                                                                      cgcgGGAAAGCCCGGTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTTATCGTTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGccc       <  6:141890/148‑1 (MQ=39)                                                                                                                                       gcgGGCAAGCCCGCccccgcacggatcaccacaggcccaagggttgtggtggcgcgtgcaggagcgggcttgcccgcgaaactgtcgaaaccggtcttacagaatgtaacgcgacaggtcttcgttctgtgccagctcccccaggtggc     >  7:154176‑M1/1‑14 (MQ=255)                                                                                                                                        cgGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATg    >  5:158742/1‑149 (MQ=255)                                                                                                                                         gggCAAGCCCGCTCCTGCACGGGCCACCACAACCCTTGGGCCTGGGGTGTTCCGGGCGGGGGGGGGTTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATgg   <  7:3616/149‑1 (MQ=255)                                                                                                                                          ggCAAGCCCGCccccgcacggatcaccacaggcccaagggttgtggtggcgcgtgcaggagcgggcttgcccgcgaaactgtcgaaaccggtcttacagaatgtaacgcgacaggtcttcgttctgtgccagctcacccaggtggctgt  >  2:258126‑M1/1‑11 (MQ=255)                                                                                                                                          ggCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGc  >  8:24220/1‑149 (MQ=255)                                                                                                                                                cccGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGgcgggcttgcccgcgaaactgtcgaaaccggtcttacagaatgtaacgcgacaggtcttcgttctgtgc                      <  1:352284‑M2/123‑70 (MQ=255)                                                                                                                                                cccGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGgcgggcttgcccgcgaaactgtcgaaaccggtcttacagaatgtaacgcgacaggtcttcgttctgtgc                      >  2:352284‑M2/1‑54 (MQ=255)                                                                                                                                                    |                                                                                                                                           GGGCGACCTGGCCAGCACCCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGC  >  NC_002947/5698596‑5698881

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.