New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5698743	27 (0.490)	7 (0.150)	5/222	NT	23.2%	intergenic (+33/‑134)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
	?	NC_002947	= 5698792	23 (0.480)					intergenic (+82/‑85)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein

CGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTAC  >  NC_002947/5698646‑5698939                                                                                                                                                   |                                                                                                                                                    cgTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCAGgagc                                                                                                                                                   <  7:108614/149‑1 (MQ=255)     tgtgAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGGCCGGCCGCGACTGGACGCGCCACGTCCCACCTTGGGGCGGTGGGGTTGCGTTCGggggggggg                                                                                                                                               >  1:247017/1‑148 (MQ=255)          aCAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGgcgggcttgcc                                                                                                                                          >  2:258126‑M2/1‑138 (MQ=255)             gCCACCTGGGGGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGgcgggcttgcccgc                                                                                                                                       >  7:154176‑M2/1‑135 (MQ=255)                         cgcggccacacaACGAAGACCTGGCGGTTTACTTTCTTACAGCCGGGTTCCCACTGTTCCGGGGCCACCCCCGCGCCGGCCCGCCCCCCCACACCCCTGGGGCCGGGGTTGATCGGGGCGGGGGGGGGCTTGCCCGCGAAGAGGCCCtt                                                                                                                           <  6:206838/143‑1 (MQ=255)                         aGCTGGCACAGAACGAAGACCTGGCGCGTTACATTCTGTAAGCCCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCCCGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCtt                                                                                                                           <  7:328186/149‑1 (MQ=255)                                      cGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTccccc                                                                                                              <  7:90229/149‑1 (MQ=255)                                           aCCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGAGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAag                                                                                                                                   >  3:100657/1‑123 (MQ=255)                                           aCCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGAGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAag                                                                                                                                   <  4:100657/123‑1 (MQ=255)                                                       aCATTCTGTACGACCGGTTTCGACCGTTTCGCGGGCAAGCCCGCGCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTTCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCtgt                                                                                              <  1:260377/148‑1 (MQ=255)                                                                                  ttCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGcc                                                                  >  7:195611/1‑149 (MQ=255)                                                                                    cgcgGGAAAGCCCGGTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTTATCGTTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGccc                                                                 <  6:141890/148‑1 (MQ=39)                                                                                      cgGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATg                                                              >  5:158742/1‑149 (MQ=255)                                                                                       gggCAAGCCCGCTCCTGCACGGGCCACCACAACCCTTGGGCCTGGGGTGTTCCGGGCGGGGGGGGGTTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATgg                                                             <  7:3616/149‑1 (MQ=255)                                                                                        ggCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGc                                                            >  8:24220/1‑149 (MQ=255)                                                                                              cccGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGgcgggcttgcccgcgaaactgtcgaaaccggtcttacagaatgtaacgcgacaggtcttcgttctgtgc                                                                                <  1:352284‑M2/123‑70 (MQ=255)                                                                                              cccGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGgcgggcttgcccgcgaaactgtcgaaaccggtcttacagaatgtaacgcgacaggtcttcgttctgtgc                                                                                >  2:352284‑M2/1‑54 (MQ=255)                                                                                                   tCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGgcgggcttgcccgcgaaactgtcgaaaccggtcttacagaatgtaacgcgacaggtcttcgttctgtgccagctcacccaggtggctgttcacatacgcc                                                 <  2:317599‑M2/149‑101 (MQ=255)                                                                                                     cTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGcc                                                                  >  3:257882/1‑130 (MQ=255)                                                                                                     cTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGcc                                                                  <  4:257882/130‑1 (MQ=255)                                                                                                     cTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTAcc                                               >  5:199604/1‑149 (MQ=255)                                                                                                                accacAACCCTTGGGCCTGTGGTGATCCGTGCGGGGgcgggcttgcccgcgaaactgtcgaaaccggtcttacagaatgtaacgcgacaggtcttcgttctgtgccagctcacccaggtggctgttcacatacgccgcgtcgatctgga                                    >  1:317599‑M2/1‑36 (MQ=255)                                                                                                                  cacaACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGc                                  <  7:24220/149‑1 (MQ=255)                                                                                                                    caACCCTTGGGCCTGTGGTGATCCGTGCGGGGgcgggcttgcccgcgaaactgtcgaaaccggtcttacagaatgtaacgcgacaggtcttcgttctgtgccagctcacccaggtggctgttcacatacgccgcgtcgatctggatcgg                                <  5:318577‑M2/149‑118 (MQ=255)                                                                                                                    caACCCTTGGGCCTGTGGTGATCCGTGCGGGGgcgggcttgcccgcgaaactgtcgaaaccggtcttacagaatgtaacgcgacaggtcttcgttctgtgccagctcacccaggtggctgttcacatacgccgcgtcgatctggatcgg                                <  3:68864‑M2/149‑118 (MQ=255)                                                                                                                          ttGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGcc                          >  8:167607/1‑149 (MQ=255)                                                                                                                           tGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCGTCATCACCTGACGAGAGATTCTGCCCATGGCCCGCCTGCGTACCGCCCTCCACCTACACAACGCCt                         >  5:304429/1‑149 (MQ=255)                                                                                                                              gCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTcc                       >  2:135098/1‑148 (MQ=255)                                                                                                                                cTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCgcctgcc                                                   <  5:368156/118‑1 (MQ=255)                                                                                                                                cTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCgcctgcc                                                   >  6:368156/1‑118 (MQ=255)                                                                                                                                   gggtgATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACACAGCCTCCAAGa                   <  6:199604/146‑1 (MQ=255)                                                                                                                                      tgATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCt               >  2:67646/1‑148 (MQ=255)                                                                                                                                           cGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCt         >  2:334533/1‑149 (MQ=255)                                                                                                                                            gTGCGGGGGCGGGGTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTc        <  5:187880/149‑1 (MQ=255)                                                                                                                                            gTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTc        <  1:334533/149‑1 (MQ=255)                                                                                                                                             tGCTGGTgcggccgtgcccgcgaaactgtcgaaaccggtcttacagaatgtaacgcgacaggtcttcgttctgtgccagctcacccaggtggctgttcacatacgccgcgtcgatctggatcggcgcttcgtcatgggtgctggccagg       >  3:265804‑M2/1‑7 (MQ=255)                                                                                                                                               cGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGAc                  >  3:250922/1‑136 (MQ=255)                                                                                                                                               cGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGAc                  <  4:250922/136‑1 (MQ=255)                                                                                                                                                  gggcgggtTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCAAAAAGCCTCCAAGACCCTCAGCCTCACCTAc  >  2:226688/1‑149 (MQ=255)                                                                                                                                                  gggcgggcTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCAGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTAc  <  1:67646/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    CGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTAC  >  NC_002947/5698646‑5698939

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.