New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 5811343 =55 (0.990)4 (0.080) 4/244 NT 7.9% coding (671/2220 nt) priA primosome assembly protein
?NC_002947 5811376 = 41 (0.780)coding (704/2220 nt) priA primosome assembly protein

CCAAGGACCTGGTACAGATCGAGACGCGCCGCCACTTGCCGGCACTACGTCATGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAACTGATCCGTGAAACCCTGGAAGCCGGCAAGCAGGCGCTGGTGCTGATCCCGGAGATCAACCTCGGCCCGCAAACCCTGGCCCGCTTCGAGCAACGC  >  NC_002947/5811196‑5811488
                                                                                                                                                    |                                                                                                                                                 
ccAAGGACCTGGTACAGATCGAGACGCGCCGCCACTTGCCGGCACTACGTCATGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTc                                                                                                                                                  >  5:237088/1‑149 (MQ=255)
ccAAGGACCTGGTACAGATCGAGACGCGCCGCCACTTGCCGGCACTACGTCATGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTc                                                                                                                                                  >  5:231893/1‑149 (MQ=255)
ccAAGGACCTGGTACAGATCGAGACGCGCCGCCACTTGCCGGCACTACGTCATGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTc                                                                                                                                                  <  4:110038/149‑1 (MQ=255)
 ccgcagagtgcagcagggcaatgcgcgcgttgaagcgttgctcgaagcgggccagggtttgcgggccgaggttgatctccgggatcagcaccagcgcctgcttgccggcttccagggtttcacggatcagttgcaggtagacctcggTc                                                                                                                                                  >  4:305714‑M1/148‑149 (MQ=255)
 cAAGGACCTGGTACAGATCGAGACGCGCCGCCACTTGCCGGCACTACGTCATGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCt                                                                                                                                                 >  7:325188/1‑149 (MQ=255)
  aaGGACCTGGTACAGATCGAGACGCGCCGCCACTTGCCGGCACTACGTCATGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCtt                                                                                                                                                <  2:269074/149‑1 (MQ=255)
    cagagtgcagcagggcaatgcgcgcgttgaagcggtgctcgaagcgggccagggtttgcgggccgaggttgatctccgggatcagcaccagcgcctgcttgccggcttccagggtttcacggatcagttgcaggtagacctcggTCTTg                                                                                                                                               >  2:320311‑M1/145‑149 (MQ=255)
     agtgtgcagcagggcaatgcgcgcgttgaagcgttgctcgaagcgggccagggttggcgggccgaggttgatctccgggatcagcaccagcgcctgcttgccggcttccagggtttcacggatcagttgcaggtagacctcggTCTTGc                                                                                                                                              >  5:146894‑M1/144‑149 (MQ=255)
      aCCTGGTACAGATCGAGACGCGCCGCCACTTGCCGGCACTACGTCATGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTg                                                                                                                                            <  3:213174/149‑1 (MQ=255)
       ccTGGTACAGATCGAGACGCGCCGCCACTTGCCGGCACTACGTCATGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTgg                                                                                                                                           >  4:284408/1‑149 (MQ=255)
        cTGGTACAGATCGAGACGCGCCGCCACTTGCCGGCACTACGTCATGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGc                                                                                                                                              <  1:149520/145‑1 (MQ=255)
        cTGGTACAGATCGAGACGCGCCGCCACTTGCCGGCACTACGTCATGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGc                                                                                                                                              >  2:149520/1‑145 (MQ=255)
          ggTACAGATCGAGACGCGCCGCCACTTGCCGGCACTACGTCATGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCg                                                                                                                                        >  8:144546/1‑149 (MQ=255)
            tACAGATCGAGACGCGCCGCCACTTGCCGGCACTACGTCATGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGc                                                                                                                                      <  3:284408/149‑1 (MQ=255)
                 aTCGAGACGCGCCGCCACTTGCCGGCACTACGTCATGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCAc                                                                                                                                 >  4:101831/1‑149 (MQ=255)
                          cgccgcCACTTGCCGGCACTACGTCACGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTgg                                                                                                                        >  4:293643/1‑149 (MQ=255)
                           gccgccACTTGCCGGCACTACGTCATGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGc                                                                                                                       <  6:54506/149‑1 (MQ=255)
                             cgccACTTGCCGGCACTACGTCATGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCaa                                                                                                                     <  7:144546/149‑1 (MQ=255)
                              gccACTTGCCGGCACTACGTCATGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGc                                                                                                                       >  7:31763/1‑146 (MQ=255)
                               tgaagcgttgctcgaagcgggccagggtttgcgggccgaggttgatctccgggatcagcaccagcgcctgcttgccggcttccagggtttcacggatcagttgcaggtagacctcggTCTTGCTGGCCGGCGTCACCGGCAGTGGc                                                                                                                       <  5:36597‑M1/29‑1 (MQ=255)
                               ccACTTGCCGGCACTACGTCATGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGa                                                                                                                   >  6:291952/1‑149 (MQ=255)
                               ccACTTGCCGGCACTACGTCATGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGa                                                                                                                   <  4:346743/149‑1 (MQ=255)
                                cACTTGCCGGCACTACGTCATGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGAc                                                                                                                  <  6:231893/149‑1 (MQ=255)
                                cACTTGCCGGCACTACGTCATGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGAc                                                                                                                  <  8:325188/149‑1 (MQ=255)
                                cACTTGCCGGCACTACGTCATGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGAc                                                                                                                  <  6:237088/149‑1 (MQ=255)
                                   ttGCCGGCACTACGTCATGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGAcc                                                                                                                 >  8:203933/1‑147 (MQ=255)
                                     gCCGGCACTACGTCATGAGCACTGGCTGTCACAGCCGTAACCCCTCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGa                                                                                                               <  1:119785/148‑1 (MQ=255)
                                     gCCGGCACTACGTCATGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAg                                                                                                              <  7:203933/148‑1 (MQ=255)
                                      ttgctcgaagcgggccagggtttgcgggccgaggttgatctccgggatcagcaccagcgcctgcttgccggcttccagggtttcacggatcagttgcaggtagacctcggTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAgg                                                                                                             >  6:36597‑M1/111‑149 (MQ=255)
                                      ccGGCACTACGTCATGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGt                                                                                                            <  3:101831/149‑1 (MQ=255)
                                         gCACTACGTCACGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTa                                                                                                         <  3:293643/149‑1 (MQ=255)
                                          tcgaagcgggccagggtttgcgggccgaggttgatctccgggatcagcaccagcgcctgcttgccggcttccagggtttcacggatcagttgcaggtagacctcggTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGAcc                                                                                                                 <  6:278325‑M1/35‑1 (MQ=255)
                                          tcgaagcgggccagggtttgcgggccgaggttgatctccgggatcagcaccagcgcctgcttgccggcttccagggtttcacggatcagttgcaggtagacctcggTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGAcc                                                                                                                 >  5:278325‑M1/107‑141 (MQ=255)
                                                gTCATGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCaa                                                                                                  <  5:349398/149‑1 (MQ=255)
                                                gTCATGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCaa                                                                                                  <  5:291952/149‑1 (MQ=255)
                                                 tCATGAGCAGTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAAc                                                                                                 <  8:31763/149‑1 (MQ=255)
                                                    tGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAACTGa                                                                                              <  4:49911/149‑1 (MQ=255)
                                                          ctggctggCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAACTGATCCGt                                                                                         >  3:49292/1‑148 (MQ=255)
                                                           tggctggcACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAACTGATCCGTg                                                                                        >  6:269165/1‑148 (MQ=255)
                                                             gctggcACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAACTGATCCGTGa                                                                                       <  5:303378/147‑1 (MQ=255)
                                                               tggcACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAACTGATCCGt                                                                                         >  8:272356/1‑143 (MQ=255)
                                                               tggcACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAACTGATCCGt                                                                                         <  7:272356/143‑1 (MQ=255)
                                                                  cacaGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGtt                                                                                                                                                   <  2:157092/82‑1 (MQ=255)
                                                                  cacaGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGtt                                                                                                                                                   >  1:157092/1‑82 (MQ=255)
                                                                         ggAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAg                                                                                                              >  2:77877/1‑112 (MQ=255)
                                                                         ggAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAg                                                                                                              <  1:77877/112‑1 (MQ=255)
                                                                              tGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAACTGATCCGTGATACCCTGGAAGCCGGCAAg                                                                    >  4:127425/1‑149 (MQ=255)
                                                                              tGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAACTGATCCGTGAAACCCTGGAAGCCGGCAAg                                                                    >  4:210685/1‑149 (MQ=255)
                                                                                ccGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCaa                                                                                                  >  7:19639/1‑117 (MQ=255)
                                                                                ccGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCaa                                                                                                  <  8:19639/117‑1 (MQ=255)
                                                                                         cGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAACTGATCCGTGAAACCCTGGAAGCCGGCAAGCAGGCGCTgg                                                          >  8:247529/1‑149 (MQ=255)
                                                                                            agagCAACGCTAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAACTGATCCGTGAAACCCTGGAAGCCGGCAAGCAGGCGCTGGTGc                                                       <  5:269165/149‑1 (MQ=255)
                                                                                               gCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAACTGATCCGTGAAACCCTGGAAGCCGGCAAGCAGGCGCTGGTg                                                        >  8:203393/1‑145 (MQ=255)
                                                                                               gCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAACTGATCCGTGAAACCCTGGAAGCCGGCAAGCAGGCGCTGGTg                                                        <  7:203393/145‑1 (MQ=255)
                                                                                                cAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAACTGATCCGTGAAACCCTGGAAGCCGGCAAGCAGGCGCTGGTGCTGAt                                                   >  5:8997/1‑149 (MQ=255)
                                                                                                cAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGCCAAGACCGAGGTCTACCTGCAACTGATCCGTGAAACCCTGGAAGCCGGCAAGCAGGCGCTGGTGCTGAt                                                   >  4:220199/1‑149 (MQ=255)
                                                                                                      gAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAACTGATCCGTGAAACCCTGGAAGCCGGCAAGCAGGCGCTGGTGCTGATCCCGga                                             <  4:49292/149‑1 (MQ=255)
                                                                                                      gAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAACTGATCCGTGAAACCCTGGAAGCCGGCAAGCAGGCGCTGGTGCTGATCCCGga                                             <  7:247529/149‑1 (MQ=255)
                                                                                                      gAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAACGGATCCGTGAACCCCTGGAAGCCGGCACGCAGGCGCTGGTGCTGCGCCCg                                               >  2:139423/1‑147 (MQ=255)
                                                                                                            ttCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAACTGATCCGTGAAACCCTGGCAGCCGGCAAGCAGGCGCTGGTGCTGATCCCGGAGATCaa                                       >  8:69307/1‑149 (MQ=255)
                                                                                                            ttCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAACTGATCCGTGAAACCCTGGAAGCCGGCAAGCAGGCGCTGGTGCTGATCCCGGAGATCaa                                       >  4:315738/1‑149 (MQ=255)
                                                                                                                     gtgtGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAAc                                                                                                 <  4:111250/82‑1 (MQ=255)
                                                                                                                     gtgtGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAAc                                                                                                 >  3:111250/1‑82 (MQ=255)
                                                                                                                          cGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAACTGATCCGTGAAACCCTGGAAGCCGGCAAGCAGGCGCTGGTGCTGATCCCGGAGATCAACCTCGGCCCGCaaa                         <  6:8997/149‑1 (MQ=255)
                                                                                                                          cGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAACTGATCCGTGAAACCCTGGAAGCCGGCAAGCAGGCGCTGGTGCTGATCCCGGAGATCAACCTCGGCCCGCaaa                         >  6:47177/1‑149 (MQ=255)
                                                                                                                             gggTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAACTGATCCGTGAAACCCTGGAAGCCGGCAAGCAGGCGCTGGTGCTGATCCCGGAGATCAACCTCGGCCCGCAAAccc                      >  4:314970/1‑149 (MQ=255)
                                                                                                                              ggTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAACTGATCCGTGAAACCCTGGAAGCCGGCAAGCAGGCGCTGGTGCTGATCCCGGAGATCAACCTCGGCCCGCAAACCCt                     >  2:189487/1‑149 (MQ=255)
                                                                                                                                ttttGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAACTGATCCGTGAAACCCTGGAAGCCGGCAAGCAGGCGCTGGTGCTGATCCCGGAGATCAACCTCGGCCCGCAAACCCTgg                   <  6:42600/149‑1 (MQ=255)
                                                                                                                                           tCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAACTGATCCGTGAAACCCTGGAAGCCGGCAAGCAGGCGCTGGTGCTGATCCCGGAGATCAACCTCGGCCCGCAAACCCTGGCCCGCTTCGa         <  3:210685/148‑1 (MQ=255)
                                                                                                                                                 cgTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAACTGATCCGTGAAACCCTGGAAGCCGGCAAGCAGGCGCTGGTGCTGATCCCGGAGATCAACCTCGGCCCGCAAACCCTGGCCCGCTTCGAGCAACGc  >  1:225862/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                 
CCAAGGACCTGGTACAGATCGAGACGCGCCGCCACTTGCCGGCACTACGTCATGAGCACTGGCTGGCACAGCCGGAACTGCCGCTCAACGAAGAGCAACGCGAAGCCTTCGACGCCGTGTGCGAGGGTTTTGGCGGTTTCGGCGCGTTCTTGCTGGCCGGCGTCACCGGCAGTGGCAAGACCGAGGTCTACCTGCAACTGATCCGTGAAACCCTGGAAGCCGGCAAGCAGGCGCTGGTGCTGATCCCGGAGATCAACCTCGGCCCGCAAACCCTGGCCCGCTTCGAGCAACGC  >  NC_002947/5811196‑5811488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.