New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	63722 =	56 (1.010)	5 (0.100)	5/240	NT	10.1%	coding (741/858 nt)	PP_0054	membrane protein
	?	NC_002947	63778 =	37 (0.710)					coding (797/858 nt)	PP_0054	membrane protein

GGCAGTGTGGTCAGCGCCAGCCTTGCGGGCGTCAT‑GCACTGGCAGGTTGGCGCCCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGCTCTACTCGGCTAGCAACTCGCTTTGTTCGGCCGCGCACAACGCCAGCAGGTAGTCCCACACCACCCGCAGGCGCACAGAC  >  NC_002947/63642‑63906                                                                                                                                           |                                                                                                                                 ggCAGTGTGGTCAGCGCCAGCCTTGCGGGCGTCAT‑GCACTGGCAGGTTGGCGCCCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTgg                                                                                                                       >  8:326163/1‑148 (MQ=255)  gCAGTGTGGTCAGCGCCAGCCTTGCGGGCGTCATGGCACTGGCAGGTTGGCGCCCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTgg                                                                                                                       >  1:229273/1‑148 (MQ=255)    aGTGTGGTCAGCGCCAGCCTTGCGGGCGTCAT‑GCACTGGCAGGTTGGCGCCCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAgg                                                                                                                   >  3:27456/1‑149 (MQ=255)      tgtgGTCAGCGCCAGCCTTGCGGGCGTCAT‑GCACTGGCAGGTTGGCGCGCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGtt                                                                                                                 <  2:273143/149‑1 (MQ=255)        tgGTCAGCGCCAGCCTTGCGGGCGTCAT‑GCACTGGCAGGTTGGCGCCCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTg                                                                                                                <  3:52517/148‑1 (MQ=255)           tCAGCGCCAGCCTTGCGGGCGTCAT‑GCACTGGCAGGTTGGCGCCCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGcc                                                                                                            >  5:363543/1‑149 (MQ=255)              gcgcCAGCCTTGCGGGCGTCAT‑GCACTGGCAGGTTGGCGCCCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCt                                                                                                         <  2:229273/149‑1 (MQ=255)                 ccAGCCTTGCGGGCGTCAT‑GCACTGGCAGGTTGGCGCCCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGcc                                                                                                      >  6:300184/1‑149 (MQ=255)                 ccAGCCTTGCGGGCGTCAT‑GCACTGGCAGGTTGGCGCCCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGcc                                                                                                      <  3:307699/149‑1 (MQ=255)                  cAGCCTTGCGGGCGTCAT‑GCACTGGCAGGTTGGCGCCCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCTGGCGCGGCCTTTGGCAGCCCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGcc                                                                                                      <  1:281951/149‑1 (MQ=255)                            ggCGTCAT‑GCACTGGCAGGTTGGCGCCCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGc                                                                                           <  4:125644/149‑1 (MQ=255)                                  aT‑GCACTGGCAGGTTGGCGCCCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGCCCtgtt                                                                                                 <  8:29434/137‑1 (MQ=255)                                  aT‑GCACTGGCAGGTTGGCGCCCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGCCCtgtt                                                                                                 >  7:29434/1‑137 (MQ=255)                                  aT‑GCACTGGCAGGTTGGCGCCCCGTTTGCCGTCGGCGCAGTGCGCGGTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCaa                                                                                     <  5:300184/149‑1 (MQ=255)                                   t‑GCACTGGCAGGTTGGCGCCCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAg                                                                                    <  1:60860/149‑1 (MQ=255)                                      cACTGGCAGGTTGGCGCCCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCATCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAgg                                                                                   <  5:251181/148‑1 (MQ=255)                                       aCTGGCAGGTTGGCGCCCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGct                                                                                 >  4:47449/1‑149 (MQ=255)                                        cTGGCAGGTTGGCGCCCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGctc                                                                                <  3:47449/149‑1 (MQ=255)                                               gTTGGCGCCCCGTTTGCCGTCTGCGGATTGCTGGGTCTGCTGCTGGGGGGGCCTTTGGCAT‑CCAGATTGGGCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGTCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGCTCTACTCg                                                                          <  4:27456/148‑1 (MQ=255)                                               gTTGGCGCCCCGTTTGCCGGCGGCGCAGTGCTCGGTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGTGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGCTCTACTCgg                                                                         <  2:39300/149‑1 (MQ=255)                                                ttGGCGCCCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGCTCTACTCGGc                                                                        <  6:363543/149‑1 (MQ=255)                                                  ggCGCCCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTCGGCCGGCAAGGCTCTACTCGGCt                                                                       <  7:326163/148‑1 (MQ=255)                                                   gcgcCCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTg                                                                                                                        <  6:235490/98‑1 (MQ=255)                                                    cgcCCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGCTCTACTCGGCTAGc                                                                    <  2:258003/149‑1 (MQ=255)                                                       cccGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGc                                                                                  <  3:215679/132‑1 (MQ=255)                                                       cccGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGc                                                                                  >  4:215679/1‑132 (MQ=255)                                                         cGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGCTCTACTCGGCTAGCAACTc                                                               <  4:232894/149‑1 (MQ=255)                                                                acggggCGCAGTGCTCGGTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGCTCTACTCGGCTAGCAACTCGCTTTGt                                                        <  8:94778/145‑1 (MQ=255)                                                                         aGTGCTCGGTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGCTCTACTCGGCTAGCAACTCGCTTTGTTCGGCcgcg                                               >  4:273256/1‑149 (MQ=255)                                                                                ggTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGCTCTACTCGGCTAGCAACTCGCTTTGTTCGGCCGCGCACAAc                                         <  6:204377/148‑1 (MQ=255)                                                                                   tctgctgcagacgcggcccggccaatctggctgccaaaggccgcgccagcagcagaTGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGCTCTACTCGGCTAGCAACTCGCTTTGTTc                                                      <  5:231749‑M2/77‑1 (MQ=255)                                                                                   tctgctgcagacgcggcccggccaatctggctgccaaaggccgcgccagcagcagaTGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGCTCTACTCGGCTAGCAACTCGCTTTGTTc                                                      >  6:231749‑M2/57‑133 (MQ=255)                                                                                      gctgcagacgcggcccggccaatctggctgccaaaggccgcgccagcagcagaTGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGCTCTACTCGGCTAGCAACTCGCTTTGTTCGGCCGCGCACAACGCcagc                                   >  5:130691‑M2/54‑149 (MQ=255)                                                                                      CTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGCTCTACTCGGCTAGCAACTCGCTTTGTTCGGCCGCGCACAACGCcag                                    <  6:114830‑M1/147‑1 (MQ=255)                                                                                       ctgcagacgcggcccggccaatctggctgccaaaggccgcgccagcagcagaTGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGCTCTACTCGGCTAGCAACTCGCTTTGTTCGGCCGCGCACAACGCcag                                    >  1:250776‑M2/53‑147 (MQ=255)                                                                                       TGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGCTCTACTCGGCTAGCAACTCGCTTTGTTCGGCCGCGCACAACGCcagcag                                 <  6:234983‑M1/149‑1 (MQ=255)                                                                                         CTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGCTCTACTCGGCTAGCAACTCGCTTTGTTCGGCCGCGCACAACGCcagcag                                 >  3:273256‑M1/1‑147 (MQ=255)                                                                                              gcgGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGATTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCAGGCAAGGCTCTACTCGGCTAGCAACTCGCTTTGTTAGGCCGCGCACAACGCCAGCAGCTAGTcc                          >  3:263759/1‑149 (MQ=255)                                                                                               gcggcccggccaatctggctgccaaaggccgcgccagcagcagaTGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGCTCTACTCGGCTAGCAACTCGCTTTGTTCGGCCGCGCACAACGCCAGCAGGTAGTcc                          <  6:130691‑M2/105‑1 (MQ=255)                                                                                                   cTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGCTCTACTCGGCTAGCAACTCGCTTTGTTCGGCCGCGCACAACGCCAGCAGGTAGTCCCacac                     <  5:114830/149‑1 (MQ=255)                                                                                                    tttGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGCTCTACTCGGCTAGCAACTCGCTTTGTTCGGCCGCGCACAACGCCAGCAGGTAGTCCCAcccc                    >  4:104116/1‑149 (MQ=255)                                                                                                             ccAGATTGGCCGGGCCGCGGCTGCAGCAGATGTTTGCCGGGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGCTCTACTCGGCTATCAACTCGCTTTGTTCGGCCGCGCACAACGCCAGCAGGTAGTGCCACACCACCCGCAg            <  4:263759/149‑1 (MQ=255)                                                                                                                gATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGCTCTACTCGGCTAGCAACTCGCTTTGTTCGGCCGCGCACAAc                                         >  5:289802/1‑117 (MQ=255)                                                                                                                gATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGCTCTACTCGGCTAGCAACTCGCTTTGTTCGGCCGCGCACAAc                                         <  6:289802/117‑1 (MQ=255)                                                                                                                       cgggccgCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGCTCTACTCGGCTAGCAACTCGCTTTGTTCGGCCGCGCACAACGCCAGCAGGTAGTCCCACACCACCCGCAGGCGCACAGAc  <  5:234983/149‑1 (MQ=255)                                                                                                                                   gcagcagaTGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGCTCTACTCGGCTAGCAACTCGCTTTGTTCGGCCGCGCACAACGCCAGCAGGTAGTcc                          <  3:343530‑M2/105‑1 (MQ=255)                                                                                                                                   gcagcagaTGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGCTCTACTCGGCTAGCAACTCGCTTTGTTCGGCAGCGCACAACGCCAGCAGGTAGTcc                          >  4:343530‑M2/9‑113 (MQ=255)                                                                                                                                           |                                                                                                                                 GGCAGTGTGGTCAGCGCCAGCCTTGCGGGCGTCAT‑GCACTGGCAGGTTGGCGCCCCGTTTGCCGTCGGCGCAGTGCTCGGTCTGCTGCTGGCGCGGCCTTTGGCAG‑CCAGATTGGCCGGGCCGCGTCTGCAGCAGATGTTTGCCGTGGCAGGTTGGGCCGCTGCCCTGTTGTTGGCCGGCAAGGCTCTACTCGGCTAGCAACTCGCTTTGTTCGGCCGCGCACAACGCCAGCAGGTAGTCCCACACCACCCGCAGGCGCACAGAC  >  NC_002947/63642‑63906

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.