New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 817844	44 (0.790)	5 (0.090)	4/246	NT	10.5%	coding (324/951 nt)	PP_0703	transmembrane sensor
	?	NC_002947	= 817882	43 (0.810)					coding (286/951 nt)	PP_0703	transmembrane sensor

GCGCTGTAGTGCAAGTCGATGGCACTGGCGGTGTTGAGCTGCAGACGGCTGCCGTCACTGCCTTGCCATTGGCGCCGTTCGCCTGTGGCAGTGCTGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTGGGTGCTGGCTAGCGTCCAGGGTGCGCCGGCTCAGGTCCTTGGGCAGCCCGGCCAATTCATCACCCAGATTACTGACTCGCTGCCAGGCC  >  NC_002947/817734‑818030                                                                                                                                                     |                                                                                                                                                     gcgcTGTAGTGCAAGTCGATGGCACTGGCGGTGTTGAGCTGCAGACGGCTGCCGTCACTGCCTTGCCATTGGCGCCGTTCGCCTGTGGCAGTGCTGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGcccagcccag                                                                                                                                                      <  3:248705/149‑1 (MQ=255)     tGTAGTGCAAGTCGATGGCACTGGCGGTGTTGAGCTGCAGACGGCTGCCGTCACTGCCTTGCCATTGGCGCCGTTCGCCTGTGGCAGTGCTGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGgctg                                                                                                                                                  <  7:209762‑M2/149‑5 (MQ=255)              aGTCGATGGCACTGGCGGTGTTGAGCTGCAGACGGCTGCCGTCACTGCCTTGCCATTGGCGCCGTTCGCCTGTGGCAGTGCTGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACg                                                                                                                                         <  8:209762/149‑1 (MQ=255)                        aCTGGCGGTGTTGAGCTGCAGACGGCTGCCGTCACTGCCTTGCCATTGGCGCCGTTCGCCTGTGGCAGTGCTGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGcc                                                                                                                               <  1:299101/149‑1 (MQ=255)                            gCGGTGTTGAGCTGCAGACGGCTGCCGTCACTGCCTTGCCATTGGCGCCGTTCGCCTGTGGCAGTGCTGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGcccc                                                                                                                             <  4:215392/147‑1 (MQ=255)                              ggTGTTGAGCTGCAGACGGCTGCCGTCACTGCCTTGCCATTGGCGCCGTTCGCCTGTGGCAGTGCTGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCAGc                                                                                                                          >  1:164307/1‑148 (MQ=255)                                        tGCAGACGGCTGCCGTCACTGCCTTGCCATTGGCGCCGTTCGCCTGTGGCAGTGCTGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCGGCAACTTCAggtg                                                                                                               >  3:332611/1‑149 (MQ=255)                                          cAGACGGCTGCCGTCACTGCCTTGCCATTGGCGCCGTTCGCCTGTGGCAGTGCTGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACgg                                                                                                                                        <  8:286388/122‑1 (MQ=255)                                          cAGACGGCTGCCGTCACTGCCTTGCCATTGGCGCCGTTCGCCTGTGGCAGTGCTGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACgg                                                                                                                                        >  7:286388/1‑122 (MQ=255)                                            gACGGCTGCCGTCACTGCCTTGCCATTGGCGCCGTTCGCCTGTGGCAGTGCTGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTcc                                                                                                           >  4:122428/1‑149 (MQ=255)                                               ggCTGCCGTCACTGCCTTGCCATTGGCGCCGTTCGCCTGTGGCAGTGCTGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTg                                                                                                        >  4:92423/1‑149 (MQ=255)                                               ggCTGCCGTCACTGCCTTGCCATTGGCGCCGTTCGCCTGTGGCAGTGCTGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTg                                                                                                        >  2:173789/1‑149 (MQ=255)                                                    ccGTCACTGCCTTGCCATTGGCGCCGTTCGCCTGTGGCAGTGCTGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAg                                                                                                                  <  8:175605/134‑1 (MQ=255)                                                    ccGTCACTGCCTTGCCATTGGCGCCGTTCGCCTGTGGCAGTGCTGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAg                                                                                                                  >  7:175605/1‑134 (MQ=255)                                                      gTCACTGCCTTGCTATTGGCGCCGTTCGCCTGTGGCAGTGCTGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCggctgg                                                                                                 <  3:109415/149‑1 (MQ=255)                                                      gTCACTGCCTTGCCATTGGCGCCGTTCGCCTGTGGCAGTGCTGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCGGCAACTTCAGGTGGTCCCTGCggctgg                                                                                                 <  4:332611/149‑1 (MQ=255)                                                      gTCACTGCCTTGCCATTGGCGCCGTTCGCCTGTGGCAGTGCTGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCggctgg                                                                                                 >  2:73617/1‑149 (MQ=255)                                                        cACTGCCTTGCCATTGGCGCCGTTCGCCTGTGGCAGTGCTGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCggctggct                                                                                               >  3:71564/1‑149 (MQ=255)                                                             ccTTGCCTTTGGCGCCGTTGGCCTGTGGCAGTGCTGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTgg                                                                                          <  8:163833/149‑1 (MQ=255)                                                             ccTTGCCATTGGCGCCGTTCGCCTGTGGCAGTGCTGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTgg                                                                                          <  3:122428/149‑1 (MQ=255)                                                                   cATTGGCGCCGTTCGCCTGTGGCAGTGCTGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTGGGTGcag                                                                                    <  2:164307/149‑3 (MQ=255)                                                                              ttCTCCTGTGGCAGTGCTGGTGTCTGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCACAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTGGGTGCTGGCTAGCGTCCa                                                                         <  5:187261/149‑1 (MQ=255)                                                                                cGCCTGTGGCAGTGCTGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTGGGTGCTGGCTAGCGTCCAg                                                                        <  2:205871/148‑1 (MQ=255)                                                                                   cTGTGGCAGTGCTGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTGGGTGCTGGCTAGCGTCCAGGGTg                                                                    >  8:137937/1‑149 (MQ=255)                                                                                         cAGTGCTGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTGGGTGCTGGCTAGCGTCCAGGGTGCGCCgg                                                              <  3:92423/149‑1 (MQ=255)                                                                                            tGCTGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCACGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTGGGt                                                                                        >  2:319472/1‑120 (MQ=255)                                                                                            tGCTGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCACGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTGGGt                                                                                        <  1:319472/120‑1 (MQ=255)                                                                                              cTGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTGGGTGCTGGCTAGCGTCCAGGGTGCGCCGGCTCAg                                                         <  7:137937/149‑1 (MQ=255)                                                                                               tGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTGGGTGCTGGCTAGCGTCCAGGGTGCGCCGGCTCAgg                                                        >  6:66415/1‑149 (MQ=255)                                                                                                   gtCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTGGGTGCTGGCTAGCGTCCAGGGTGCGCCGGCTCAGGTCCt                                                    >  4:78702/1‑149 (MQ=255)                                                                                                     cGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTGGGTGCTGGCTAGCGTCCAGGGTGCGCCGGCTCAGGTCCTTg                                                  <  8:70957/149‑1 (MQ=255)                                                                                                       gCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGgctgctggccgacaccagcactgccacaggcgaacggcgccaatggcaaggcagtgacggcagccgtctgcagctcaacaccgccagtgccatcgacttgca                                                <  1:288087‑M2/149‑103 (MQ=255)                                                                                                       gCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTGGGTGCTGGCTAGCGTCCAGGGTGCGCCGGCTCAGGTCCTTggg                                                >  3:179794/1‑149 (MQ=255)                                                                                                        ccAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGgctgctggccgacaccagcactgccacaggcgaacggcgccaatggcaaggcagtgacggcagccgtctgcagctcaacaccgccagtgccatcgacttgcac                                               <  4:234130‑M2/149‑104 (MQ=255)                                                                                                        ccAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGgctgctggccgacaccagcactgccacaggcgaacggcgccaatggcaaggcagtgacggcagccgtctgcagctcaacaccgccagtgccatcgacttgcac                                               <  5:28646‑M2/149‑104 (MQ=255)                                                                                                          agcagcTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTGGGTGCTGGCTAGCGTCCAGGGTGCGCCGGCTCAGGTCCTTGGGCAg                                             <  3:78702/149‑1 (MQ=255)                                                                                                           gcagcTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGgctgctggccgacaacagcactgccacaggcgaacggcgccaatggcaaggcagtgacggcagccggctgcagatcaacaccgccagtgccatcgacttgcacta                                             <  4:247439‑M2/148‑106 (MQ=255)                                                                                                                        gCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTGGGTGCTGGCTAGCGTCCAGGGTGCGCCGGCTCAGGTCCTTGGGCAGCCCGGCCAATtcat                               >  7:43790/1‑149 (MQ=255)                                                                                                                          cTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTGGGTGCTGGCTAGCGTCCAGGGTGCGCCGGCTCAGGTCCTTggg                                                <  4:251336/130‑1 (MQ=255)                                                                                                                          cTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTGGGTGCTGGCTAGCGTCCAGGGTGCGCCGGCTCAGGTCCTTggg                                                >  3:251336/1‑130 (MQ=255)                                                                                                                                        gcgGCCCAGCCCAGgctgctggccgacaccagcactgccacaggcgaacggcgccaatggcaaggcagtgacggcagccgtctgcagctcaacaccgccagtgccatcgacttgcactacagcgcggagcaacgccagctgaaactgat               >  3:234130‑M2/1‑14 (MQ=255)                                                                                                                                            cccagcccagGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTGGGTGCTGGCTAGCGTCCAGGGTGCGGCGGCTCAGGTCCTTGGGCAGCCCGGCCAATTAATCACCCAGCTTACTGACTCGc           >  4:34617/1‑149 (MQ=255)                                                                                                                                             ccagcccagGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTGGGTGCTGGCTAGCGTCCAGGGTGCGCCGGCTCAGGTCCTTGGGCAGCCCGGc                                       >  3:187419/1‑120 (MQ=255)                                                                                                                                             ccagcccagGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTGGGTGCTGGCTAGCGTCCAGGGTGCGCCGGCTCAGGTCCTTGGGCAGCCCGGc                                       <  4:187419/120‑1 (MQ=255)                                                                                                                                             ccagcccagGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTGGGTGCTGGCTAGCGTCCAGGGTGCGCCGGCTCAGGTCCTTGGGCAGCCCGGCCAATTCATCACCCAGATTACTGACt              >  2:92675/1‑145 (MQ=255)                                                                                                                                             ccagcccagGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTGGGTGCTGGCTAGCGTCCAGGGTGCGCCGGCTCAGGTCCTTGGGCAGCCCGGCCAATTCATCACCCAGATTACTGACt              <  1:92675/145‑1 (MQ=255)                                                                                                                                              cagcccagGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTGGGTGCTGGCTAGCGTCCAGGGTGCGCCGGCTCAGGTCCTTGGGCAGCCCg                                         >  2:344729/1‑117 (MQ=255)                                                                                                                                              cagcccagGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTGGGTGCTGGCTAGCGTCCAGGGTGCGCCGGCTCAGGTCCTTGGGCAGCCCg                                         <  1:344729/117‑1 (MQ=255)                                                                                                                                                gcccagGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTGGGTGCTGGCTAGCGTCCAGGGTGCGCCGGCTCAGGTCCTTg                                                  <  2:2399/106‑1 (MQ=255)                                                                                                                                                gcccagGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTGGGTGCTGGCTAGCGTCCAGGGTGCGCCGGCTCAGGTCCTTg                                                  >  1:2399/1‑106 (MQ=255)                                                                                                                                                     ggCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTGGGTGCTGGCTAGCGTCCAGGGTGCGCCGGCTCAGGTCCTTGGGCAGCCCGGCCAATTCATCACCCAGATTACTGACTCGCTgccaggcc  <  4:179794/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GCGCTGTAGTGCAAGTCGATGGCACTGGCGGTGTTGAGCTGCAGACGGCTGCCGTCACTGCCTTGCCATTGGCGCCGTTCGCCTGTGGCAGTGCTGGTGTCGGCCAGCAGCTGTGGCAGGCCTAGCGGTTCGCGCGCGGCCCAGCCCAGGCTGCCGCCCACGGCCAACAGCCCCAGCAACTTCAGGTGGTCCCTGCGGCTGGCTTTTGGGTGCTGGCTAGCGTCCAGGGTGCGCCGGCTCAGGTCCTTGGGCAGCCCGGCCAATTCATCACCCAGATTACTGACTCGCTGCCAGGCC  >  NC_002947/817734‑818030

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.