New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1410031 =	54 (0.980)	5 (0.090)	4/246	NT	9.6%	coding (701/1059 nt)	nadA	quinolinate synthase iron‑sulfur cluster subunit
	?	NC_002947	1410076 =	42 (0.790)					coding (746/1059 nt)	nadA	quinolinate synthase iron‑sulfur cluster subunit

CCTGCATCGTTCACGAAGAGTTCAAGTCGCGCCAGTTGGCTGACATGAAGGCGCTGTACCCGGATGCTGCGATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCATCTTCTACAAGATGCAGCAGTTGTGCCCGGACAAGGAATTCGTCGAAGCCCCCACCGCCGGCAACGGCGCGGCATGCCGCAGCTGTGCGCA  >  NC_002947/1409929‑1410220                                                                                                                                                    |                                                                                                                                                 ccTGCCTCGTTCACGAAGAGTTCAAGTCGCGCCAGTGGGGGGACATGAAGGCGCTGTACCCGGATGCTGCGATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCaa                                                                                                                                                  <  8:288048/148‑1 (MQ=255) ccTGCATCGTTCACGAAGAGTTCAAGTCGCGCCAGTTGGCTGACATGAAGGCGCTGTACCCGGATGCTGCGATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGACCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAg                                                                                                                                                 <  1:69764/149‑1 (MQ=255)         gTTCACGAAGAGGTCAAGGCGCGCCAGTTGGCTGACATGAAGGCGCTGTACCCGGATGCTGCGATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCa                                                                                                                                         <  5:223381/149‑1 (MQ=255)          ttCACGAAGAGTTCAAGTCGCGCCAGTTGGCTGACATGAAGGCGCTGTACCCGGATGCTGCGATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGcc                                                                                                                                           >  2:154734/1‑146 (MQ=255)                      tCAAGTCGCGCCAGTTGGCTGACATGAAGGCGCTGTACCCGGATGCTGCGATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGaa                                                                                                                             >  5:41355/1‑148 (MQ=255)                       cAAGTCGCGCCAGTTGGCTGACATGAAGGCGCTGTACCCGGATGCTGCGATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGc                                                                                                                                 <  1:29738/143‑1 (MQ=255)                       cAAGTCGCGCCAGTTGGCTGACATGAAGGCGCTGTACCCGGATGCTGCGATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGc                                                                                                                                 >  2:29738/1‑143 (MQ=255)                       cAAGTCGCGCCAGTTGGCTGACATGAAGGCGCTGTACCCGGATGCTGCGATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAAc                                                                                                                            >  7:292881/1‑148 (MQ=255)                           tCGCGCCAGTTGGCTGACATGAAGGCGCTGTACCCGGATGCTGCGATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGAc                                                                                                                                      >  6:38823/1‑134 (MQ=255)                           tCGCGCCAGTTGGCTGACATGAAGGCGCTGTACCCGGATGCTGCGATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGAc                                                                                                                                      <  5:38823/134‑1 (MQ=255)                             gcgcCAGTTGGCTGACATGAAGGCGCTGTACCCGGATGCTGCGATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCt                                                                                                                     <  8:292881/149‑1 (MQ=255)                               gcCAGTTGGCTGACATGAAGGCGCTGTACCCGGATGCTGCGATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCtt                                                                                                                    >  1:269307/1‑148 (MQ=255)                               gcCAGTTGGCTGACATGAAGGCGCTGTACCCGGATGCTGCGATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCtt                                                                                                                    >  2:326511/1‑148 (MQ=255)                               gcCAGTTGGCTGACATGAAGGCGCTGTACCCGGATGCTGCGATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTc                                                                                                                   <  2:269307/149‑1 (MQ=255)                                         tGACATGAAGGCGCTGTACCCGGATGCTGCGATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGCTCAAGGCTGCCCAGCCCCTGCCGCACAAAGCCTTCATCGTCGCCa                                                                                                         >  8:96385/1‑149 (MQ=255)                                                aaGGCGCTGTACCCGGATGCTGCGATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCaccgaccg                                                                                                  >  7:36738/1‑149 (MQ=255)                                                     gcTGTACCCGGATGCTGCGATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCaccga                                                                                                     <  6:238078/141‑1 (MQ=255)                                                     gcTGTACCCGGATGCTGCGATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCaccga                                                                                                     >  5:238078/1‑141 (MQ=255)                                                         tACCCGGATGCTGCGATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCAtctt                                                                                         <  7:96385/149‑1 (MQ=255)                                                         tACCCGGATGCTGCGATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCAtctt                                                                                         <  2:187512/149‑1 (MQ=255)                                                          aCCCGGATGCTGCGATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCAtcttc                                                                                        >  2:245108/1‑149 (MQ=255)                                                          aCCCGGATGCTGCGATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCAtctt                                                                                         <  7:310883/148‑1 (MQ=255)                                                          aCCCGGATGCTGCGATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCAtctt                                                                                         >  8:310883/1‑148 (MQ=255)                                                           cccGGATGCTGCGATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCAtcttc                                                                                        <  2:266173/148‑1 (MQ=255)                                                           cccGGATGCTGCGATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCAtcttc                                                                                        >  1:266173/1‑148 (MQ=255)                                                            ccGGATGCTGCAATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCAtcttct                                                                                       <  6:165921/148‑1 (MQ=255)                                                            ccGGATGCTGCAATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCAtcttct                                                                                       >  5:165921/1‑148 (MQ=255)                                                             cGGATGCTGCGATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCATCTTCTAc                                                                                     <  1:326511/149‑1 (MQ=255)                                                                      cGATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCATCTTCTACAAGATgca                                                                             <  5:358563/148‑1 (MQ=255)                                                                        aaggttttgttcggcagggtctgggcagcctTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCtgt                                                                                                                                            >  2:282587‑M1/32‑82 (MQ=255)                                                                        aaggttttgttcggcagggtctgggcagcctTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCtgt                                                                                                                                            <  1:282587‑M1/52‑2 (MQ=255)                                                                            tGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCATCTTCTACAAGATGCAGCAGTtg                                                                      >  4:27214/1‑149 (MQ=255)                                                                                    cccGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCATCTTCTACAAGATGCAGCAGTTGTGCCCGGa                                                              >  4:157141/1‑149 (MQ=255)                                                                                        aGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCATCTTCTACAAGATGCAGCAGTTGTGCCCGGACAAg                                                          <  1:245108/149‑1 (MQ=255)                                                                                         gTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCATCTTCTACAAGATGCAGCAGTTGTGCCCGGACAAgg                                                         <  1:154734/149‑1 (MQ=255)                                                                                             ccGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCATCTTCTACAAGATGCAGCAGTTGTGCCCGGACAAGGAAtt                                                     >  5:266932/1‑149 (MQ=255)                                                                                                acagccttgatcagctggctggtggagcccaccgcgtcggccagctcgatcaAGGCTGCCCAGACCCTGCCGAACAAAACCtt                                                                                                                    <  1:282587‑M2/31‑1 (MQ=255)                                                                                                acagccttgatcagctggctggtggagcccaccgcgtcggccagctcgatcaAGGCTGCCCAGACCCTGCCGAACAAAACCtt                                                                                                                    >  2:282587‑M2/53‑83 (MQ=255)                                                                                                        gatcagctggctggtggagcccaccgcgtcggccagctcgatcaAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCATCTTCTACAAGATGCAGCAGtt                                                                       <  8:144094‑M2/76‑1 (MQ=255)                                                                                                        gatcagctggctggtggagcccaccgcgtcggccagctcgatcaAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCATCTTCTACAAGATGCAGCAGtt                                                                       >  7:144094‑M2/45‑120 (MQ=255)                                                                                                         ATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCATCTTCTACAAGATGCAGCAGTTGTGCCCGGACAAGGAATTCGTCGAAGcccc                                         >  8:36738‑M1/1‑149 (MQ=255)                                                                                                           tcagctggctggtggagcccaccgcgtcggccagctgatcaAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCATCTTCTACAAGATGCAGCAGTTGTGCCCGGACAAGGAATTCGTCGAAGCCCCCa                                       >  7:112411‑M2/42‑149 (MQ=255)                                                                                                                     gACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAACCCTTCATCGTCGCCACCGACCGCGGCATCTTCTACAAGATGCAGCAGTTGTGCCCGGACAAGGAATTCGTCGAAGCCCCCACCGCCGGCaa                             <  3:27214/149‑1 (MQ=255)                                                                                                                     gACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCATCTTCTACAAGATGCAGCAGTTGTGCCCGGACAAGGAATTCGTCGAAGCCCCCACCGCCGGCaa                             >  6:355464/1‑149 (MQ=255)                                                                                                                              ggCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTc                                                                                                                   <  1:56319/54‑1 (MQ=255)                                                                                                                              ggCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTc                                                                                                                   >  2:56319/1‑54 (MQ=255)                                                                                                                              ggCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCATCTTCTACAAGATGCAGCAGTTGTGCCCGGACAAGGAATTCGTCGAAGccc                                          <  3:135471/127‑1 (MQ=255)                                                                                                                              ggCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCATCTTCTACAAGATGCAGCAGTTGTGCCCGGACAAGGAATTCGTCGAAGccc                                          >  4:135471/1‑127 (MQ=255)                                                                                                                                 tCCACCAGCCAGCTGATCAAGGCTGCCCAGGCCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCATCTTCTACAAGATGCAGCAGTTGTGCCCGGACAAGGaa                                                       >  4:191944/1‑111 (MQ=255)                                                                                                                                 tCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCATCTTCTACAAGATGCAGCAGTTGTGCCCGGACAAGGaa                                                       <  3:191944/111‑1 (MQ=255)                                                                                                                                       agccagcTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCATCTTCTACAAGATGCACCAGTTGTGCCCGGACAAGGAATTCGTCGAAGCCCCCACCGCCGGCAACGGCGCGGCATGCCGccg           >  7:317694/1‑147 (MQ=255)                                                                                                                                        gccagcTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCATCTTCTACAAGATGCAGCAGTTGTGCCCGGACAAGGAATTCGTCGAAGCCCCCACCGCCGGCAACGGCGCGGCATGCCGCAGc          >  7:283857/1‑149 (MQ=255)                                                                                                                                                atcaAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCATCTTCTACAAGATGCAGCAGTTGTGCCCGGACAAGGAATTCGTCGAAGCCCCCACCGCCGGCAACGGCGCGGCATGCCGCAGCTGTGCGCa  >  1:171944‑M2/5‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                 CCTGCATCGTTCACGAAGAGTTCAAGTCGCGCCAGTTGGCTGACATGAAGGCGCTGTACCCGGATGCTGCGATCCTGGTGCACCCCGAGTCGCCGGAAGCGGTGATCGAGCTGGCCGACGCGGTGGGCTCCACCAGCCAGCTGATCAAGGCTGCCCAGACCCTGCCGAACAAAACCTTCATCGTCGCCACCGACCGCGGCATCTTCTACAAGATGCAGCAGTTGTGCCCGGACAAGGAATTCGTCGAAGCCCCCACCGCCGGCAACGGCGCGGCATGCCGCAGCTGTGCGCA  >  NC_002947/1409929‑1410220

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.