New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1616849 | 52 (0.940) | 3 (0.060) | 3/244 | NT | 5.6% | coding (410/1515 nt) | PP_1416 | tricarboxylate transport protein TctA |
? | NC_002947 | = 1616879 | 52 (0.990) | coding (380/1515 nt) | PP_1416 | tricarboxylate transport protein TctA |
GAGCGGCAATGAAGGTTTTCAGTGGTTTGTCACCGGCCATGCCACCCAACGCGACGATGGCGAACACCATCAGCAC‑AAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGATCGAGCT > NC_002947/1616733‑1617021 | gagCGGCAATGAAGGTTTTCAGTGGTTTGTCACCGGCCATGCCACCCAACGCGACGATGGCGAACACCATCAGCAC‑AAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGtg < 7:271949‑M2/149‑3 (MQ=255) ggCAATGAAGGTTTTCAGTGGTTTGTCACCGGCCATGCCACCCAACGCGACGATGGCGAACACCATCAGCAC‑AAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGtggcga > 7:323178‑M2/1‑143 (MQ=255) aTGAAGGTTTTCAGTGGTTTGTCACCGGCCATGCCACCCAACGCGACGATGGCGAACACCATCAGCAC‑AAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATg > 7:190968/1‑147 (MQ=255) aaGGTTTTCAGTGGTTTGTCACCGGCCATGCCACCCAACGCGACGATGGCGAACACCATCAGCAC‑AAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGgc > 4:307596/1‑149 (MQ=255) aGGTTTTCAGTGGTTTGTCACCGGCCATGCCACCCAACGCGACGATGGCGAACACCATCAGCAC‑AAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGgcg > 5:85726/1‑149 (MQ=255) tCAGTGGTTTGTCACCGGCCATGCCACCCAACGCGACGATGGCGAACACCATCAGCAC‑AAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGTCGCAGGTGGCGATGAAGGCGCCGAt < 5:234038/148‑1 (MQ=255) aCCGGCCATGCCACCCAACGCGACGATGGCGAACACCATCAGCAC‑AAAGTACTCCGCCGGGCCGAAGGCGATGCCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAgg > 4:284609/1‑149 (MQ=255) gCCATGCCACCCAACGCGACGATGGCGAACACCATCAGCAC‑AAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATgaac > 3:111672/1‑135 (MQ=255) gCCATGCCACCCAACGCGACGATGGCGAACACCATCAGCAC‑AAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATgaac < 4:111672/135‑1 (MQ=255) gCCATGCCACCCAACGCGACGATGGCGAACACCATCAGCAC‑AAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCcga > 2:357095/1‑149 (MQ=255) aagCCACACAAAGCGTAGATTGCGAACAACATGATCACTCCAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCcgaca < 1:119472/147‑1 (MQ=255) aCCCAACGCGACGATGGCGAACACCATCAGCAC‑AAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCcgacagcgaca < 1:357095/149‑1 (MQ=255) ccAACGCGACGATGGCGAACACCATCAGCAC‑AAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAgg < 5:252144/149‑1 (MQ=255) cAACGCGACGATGGCGAACACCATCAGCAC‑AAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAggg < 8:190968/149‑1 (MQ=255) aaCGCGACGATGGCGAACACCATCAGCAC‑AAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAggg > 5:61560/1‑148 (MQ=255) gacgaTGGCGAACACCATCAGCAC‑AAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAacac < 3:307596/149‑1 (MQ=255) aTGGCGAACACCATCAGCAC‑AAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGtgg > 6:35664‑M2/1‑91 (MQ=255) aTGGCGAACACCATCAGCAC‑AAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGtgg < 5:35664‑M2/94‑4 (MQ=255) cGAACACCATCAGCAC‑AAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAgg > 8:333527/1‑149 (MQ=255) ccATCAGCAC‑AAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTgg < 3:213495/149‑1 (MQ=255) cATCAGCAC‑AAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGc > 7:92059/1‑149 (MQ=255) tCAGCAC‑AAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCCTGCCGCAGTTGGCGATGAAGGCGTCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCgg < 5:251546/149‑1 (MQ=255) aGCAC‑AAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCggg < 3:284609/148‑1 (MQ=255) gCAC‑AAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGc > 4:259991/1‑148 (MQ=255) cac‑aAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCa > 8:194228/1‑149 (MQ=255) ac‑aAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGc > 1:83038/1‑122 (MQ=255) ac‑aAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGc < 2:83038/122‑1 (MQ=255) aaaGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCg > 3:37684/1‑149 (MQ=255) aaGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCgg < 8:271949/149‑1 (MQ=255) aaGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCgg < 7:194228/149‑1 (MQ=255) cTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAAc < 8:92059/149‑1 (MQ=255) cTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAAc < 4:37684/149‑1 (MQ=255) tCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCACCACCGGCCAGACCCTGGCGGGCCATCGGGTAAc > 3:51671/1‑148 (MQ=255) tCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCgg > 4:348374/1‑135 (MQ=255) tCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCgg < 3:348374/135‑1 (MQ=255) gccgGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATc > 4:343888/1‑149 (MQ=255) ggCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAgg < 6:61560/149‑1 (MQ=255) ggCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACgg > 1:151177/1‑149 (MQ=255) ccATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGtggcgaaatgggccatcgccttcggcccggcggagtactttgtgctgatggtgttcgccatcgtcgcgttgggtggcatggccggtgacaaaccactgaaaaccttca < 1:325009‑M2/149‑109 (MQ=255) ccATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGa < 1:335444/131‑1 (MQ=255) ccATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGa > 2:335444/1‑131 (MQ=255) ccATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTc > 4:174960/1‑148 (MQ=255) ccATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCg > 3:18736/1‑149 (MQ=255) ccATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGAGGCGATGAAGGCGCCGATGAAAGAACTCCAGGCCGACAGCGACACGGCAACACCGGCCAGCCCCAGGCGGGCCATCGGGTAACACTCGAGGGTGGTCATTACGGTc > 6:253838/1‑148 (MQ=255) cGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGtggcgaaatgggccatcgccttcggcccggcggagtactttgtgctgatggtgttcgccatcgtcgcgttgggtggcatggc < 7:14724‑M2/117‑83 (MQ=255) cGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGtggcgaaatgggccatcgccttcggcccggcggagtactttgtgctgatggtgttcgccatcgtcgcgttgggtggcatggc > 8:14724‑M2/1‑35 (MQ=255) gCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCtt < 4:18736/148‑1 (MQ=255) agcagcGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGcc > 7:190677/1‑149 (MQ=255) gcagcGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGccc > 3:20247/1‑149 (MQ=255) agcGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCgg > 5:247084/1‑149 (MQ=255) ggggCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGAt > 8:124067/1‑149 (MQ=255) gggCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATg < 6:85726/149‑1 (MQ=255) gCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGtt < 5:243847/149‑1 (MQ=255) cAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCTGTCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTcagca < 5:253838/149‑1 (MQ=255) cACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGa > 1:196443/1‑149 (MQ=255) ccATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGATc < 2:151177/149‑1 (MQ=255) aTGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGATCGa < 2:196443/149‑1 (MQ=255) tGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACAGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTAAGCAGGATCGAg > 6:361433/1‑149 (MQ=255) ccGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGATCGAGc < 6:247084/148‑1 (MQ=255) cGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGATCGAGCt > 3:236101/1‑148 (MQ=255) | GAGCGGCAATGAAGGTTTTCAGTGGTTTGTCACCGGCCATGCCACCCAACGCGACGATGGCGAACACCATCAGCAC‑AAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGATCGAGCT > NC_002947/1616733‑1617021 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |