| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2674214 = | 43 (0.780) | 3 (0.060) | 3/242 | NT | 7.0% | coding (197/732 nt) | PP_2343 | hypothetical protein |
| ? | NC_002947 | 2674244 = | 39 (0.750) | coding (227/732 nt) | PP_2343 | hypothetical protein | |||||
GCATTGAAACCTATCCGGCGGATGAATACCCGGTGTCAGTTTTTATGGCAGGATCTCCTGGCGCTGGGAAAACCGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGGGTAACCACGTTTGTGGAGAGAACCCTGGATCTGGTGTACAAGCAGCGGCAGTCTTTTCTCTTGGATGGCACCCTCGCCAACCTT > NC_002947/2674103‑2674389 | gCATTGAAACCTATCCGGCGGATGAATACCCGGTGTCAGTTTTTATGGCAGGATCTCCTGGCGCTGGGAAAACCGAGCTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGAttt > 3:295348/1‑148 (MQ=255) ccgctgcttgtacaccagatccagggttctctccacaaacgtggttaccccacgctggaaaaggctggaatttttcccgttgtagtcgggaaaatactccctgaaatcgtCAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCa > 3:333292‑M1/111‑149 (MQ=255) ccTATCCGGCGGATGAATACCCGGTGTCAGTTTTTATGGCAGGATCTCCTGGCGCTGGGAAAACCGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTAt > 2:100717/1‑149 (MQ=255) gcggATGAATACCCGGTGTCAGTTTTTATGGCAGGATCTCCTGGCGCTGGGAAAACCGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCg > 8:78752/1‑148 (MQ=255) ggATGAATACCCGGTGTCAGTTTTTATGGCAGGATCTCCTGGCGCTGGGAAAACCGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAgg < 1:139871/133‑1 (MQ=255) ggATGAATACCCGGTGTCAGTTTTTATGGCAGGATCTCCTGGCGCTGGGAAAACCGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACt < 3:90576/149‑1 (MQ=255) gATGAATACCCGGTGTCAGTTTTTATGGCAGGATCTCCTGGCGCTGGGAAAACCGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTa > 4:103811/1‑149 (MQ=255) tACCCGGTGTCAGTTTTTATGGCAGGATCTCCTGGCGCTGGGAAAACCGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACgg > 7:243292/1‑149 (MQ=255) cccGGTGTCAGTTTTTATGGCAGGATCTCCTGGCGCTGGGAAAACCGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACggg < 7:78752/148‑1 (MQ=255) aGTTTTTATGGCAGGATCTCCTGGCGCTGGGAAAACCGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTcc < 3:103811/148‑1 (MQ=255) tttttATGGCAGGATCTCCTGGCGCTGGGAAAACCGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGc < 3:8938/149‑1 (MQ=255) ttATGGCAGGATCTCCTGGCGCTGGGAAAACCGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCtt > 2:204044/1‑149 (MQ=255) aTGGCAGGATCTCCTGGCGCTGGGAAAACCGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCa < 1:244304/106‑1 (MQ=255) aTGGCAGGATCTCCTGGCGCTGGGAAAACCGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCttt < 1:204044/148‑1 (MQ=255) aTGGCAGGATCTCCTGGCGCTGGGAAAACCGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATAGATCCTGACGATTTCa > 2:244304/1‑106 (MQ=255) tGGCAGGAGCACCTGGCGCTGGGAAAACCGAGGTTTCAAGTGCTTTTATCGGTTACATGCAGTCCACAGGTTCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTc < 4:295348/149‑1 (MQ=255) ctcCTGGCGCTGGGAAAACCGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAgg > 1:11652/1‑98 (MQ=255) ctcCTGGCGCTGGGAAAACCGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAgg < 2:11652/98‑1 (MQ=255) cTGGCGCTGGGAAAACCGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTggg < 1:100717/146‑1 (MQ=255) cTGGCGCTGGGAAAACCGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGGGt > 2:231551/1‑148 (MQ=255) cTGGCGCTGGGAAAACCGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGGGt > 4:128864/1‑148 (MQ=255) ggCGCTGGGAAAACCGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAATTACAAGCGTTTTCAACCTTGGGTTaa > 1:347188/1‑148 (MQ=255) gcctggcaaaCCGCTGTTTGAAGACCTTTTATCGGTTACATGCACTCCACACGTACTACTGGCGTTA‑GTTTCGCTCCTGTAGTATTCACGGTCTATTTTCCCGTATTCAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGGGTAACCAc < 2:347188/142‑1 (MQ=255) gcTGGGAAAACCGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGGGTAACCAc > 5:94407/1‑149 (MQ=255) ggAAAACCGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGGGTAACCACGttt > 3:262497/1‑149 (MQ=255) aaaaCCGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGGGTAACCACGTTtgt > 2:30921/1‑149 (MQ=255) aaaCCGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGGGTAACCACGTTtgtg < 3:128864/149‑1 (MQ=255) aCCGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGGGTAACCACGTTTGTGga < 8:243292/149‑1 (MQ=255) ccGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAAAGGGAAAAATTCCAGCATTTTCCAGCGTGGGGTAACCACGTTtgtg > 5:338803/1‑146 (MQ=255) cGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGAc < 8:177497/94‑1 (MQ=255) cGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGAc > 7:177497/1‑94 (MQ=255) cGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGGGTAACCACGTTtgtg > 7:78608/1‑145 (MQ=255) agagCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGGGTAACCACGTTTGTGGAGAGAACCCTGGa < 1:30921/149‑1 (MQ=255) ttATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGGGTAACCACGTTTGTGGAGAGAACCCTGGATCTGgt < 1:231551/148‑1 (MQ=255) tGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGGGTAACCACGTTTGTGGAGAGAACCCTGGATCTGGTGTACAAGCAGCgg > 7:332965/1‑149 (MQ=255) tgaaatcgtcaggatcgatacgtagcgcactagatcctgACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGGGTAACCACGTTTGTGGAGAGAACCCTGGATCTGGTGTACAAGCAGCgg > 3:333292‑M2/40‑149 (MQ=255) cAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGGGTAACCACGTTTGTGGAGAGAACCCTGGATCTGGTGTACAAGCAGCgg > 1:325897/1‑147 (MQ=255) cacaGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGGGTAACCACGTTTGTGGAGAGAACCCTGGATCTGGTGTACAagcagc > 7:165599/1‑140 (MQ=255) cacaGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGGGTAACCACGTTTGTGGAGAGAACCCTGGATCTGGTGTACAagcagc < 8:165599/140‑1 (MQ=255) CAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGGGTAACCACGTTTGTGGAGAGAACCCTGGATCTGGTGTACAAGCAGCGGCAGTCtttt > 4:262497‑M1/1‑149 (MQ=255) GATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGTGTAACCACGTTTGTGgagaga > 6:352526‑M1/1‑110 (MQ=255) gatcgatacgtagcgcactagatcctgACGATTTCAGGGAGTATTTTCCCGa < 6:217842‑M2/25‑1 (MQ=255) gatcgatacgtagcgcactagatcctgACGATTTCAGGGAGTATTTTCCCGa > 5:217842‑M2/28‑52 (MQ=255) tAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGGGTAACCACGTTTGTGGAGAGAACCCTGGATCTGGTGTACAagcag > 7:101108/1‑130 (MQ=255) tAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGGGTAACCACGTTTGTGGAGAGAACCCTGGATCTGGTGTACAagcag < 8:101108/130‑1 (MQ=255) aTCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGGGTAACCACGTTTGTGGAGAGAACCCTGGATCTGGTGTACAAGCAGCGGCAGTCTTTTCTCTTGGATGGCACCCTCGc > 7:230198/1‑149 (MQ=255) cGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGGGTAACCACGTTTGTGGAGAGAACCCTGGATCTGGTGTACAAGCAGCGGCAGTCTTTTCTCtt < 7:149894/132‑1 (MQ=255) cGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGGGTAACCACGTTTGTGGAGAGAACCCTGGATCTGGTGTACAAGCAGCGGCAGTCTTTTCTCtt > 8:149894/1‑132 (MQ=255) atcctgACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGGGTAACCACGTTTGTGGAGAGAACCCTGGATCTGGTGTACAAGCAGCGGCAGTCtttt < 1:147539‑M2/119‑1 (MQ=255) atcctgACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGGGTAACCACGTTTGTGGAGAGAACCCTGGATCTGGTGTACAAGCAGCGGCAGTCtttt > 2:147539‑M2/7‑125 (MQ=255) tgACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGGGTAACCACGTTTGTGGAGAGAACCCTGGATCTGGTGTACAAGCAGCGGCAGTCTTTTCTCTTGGATGGCACCCTCGCCAACCtt > 3:314530‑M2/3‑148 (MQ=255) gACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGGGTAACCACGTTTGTGGAGAGAACCCTGGATCTGGTGTACAAGCAGCGGCAGTCtttt > 3:198863‑M2/2‑120 (MQ=255) gACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGGGTAACCACGTTTGTGGAGAGAACCCTGGATCTGGTGTACAAGCAGCGGCAGTCtttt < 4:198863‑M2/119‑1 (MQ=255) | GCATTGAAACCTATCCGGCGGATGAATACCCGGTGTCAGTTTTTATGGCAGGATCTCCTGGCGCTGGGAAAACCGAGGTTTCAAGAGCTTTTATCGGTTACATGCAGTCCACAGGATCTAGT‑GCGCTACGTATCGATCCTGACGATTTCAGGGAGTATTTTCCCGACTACAACGGGAAAAATTCCAGCCTTTTCCAGCGTGGGGTAACCACGTTTGTGGAGAGAACCCTGGATCTGGTGTACAAGCAGCGGCAGTCTTTTCTCTTGGATGGCACCCTCGCCAACCTT > NC_002947/2674103‑2674389 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |